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The map label for this gene is rhaR [C]

Identifier: 170756138

GI number: 170756138

Start: 387357

End: 388481

Strand: Reverse

Name: rhaR [C]

Synonym: CLD_0445

Alternate gene names: 170756138

Gene position: 388481-387357 (Counterclockwise)

Preceding gene: 170757786

Following gene: 170755651

Centisome position: 9.81

GC content: 26.13

Gene sequence:

>1125_bases
ATGGAGTTAAATTTAGAACTGCTTAGCAAAATGAATTACTTTATTAATGTATTATTTATATTTACAGTTTTAAAATTAAA
ACTATTTTGGAATAACCTCAAACAAATATTTATAAAAAATAATTTGATTTTAAAAAAGAAAGGATTTAAATCCATGAAAA
TAGATGAAACTATGAAAGTAATTAAAAAATTTGCTTTACAACTTAATTGCAAAGAATATGATTATGGAAATGGACGCATT
TATCGTTTACCTACTGAAAATGGAGACAGTTGGTTTGTAGAGGTTCACCCTGCTGATGGACTCCTTCTTAGTGATGCCTA
TTTTTCATTATTAAAACCATTAACTTATGTTTACACTATTCCAGAAAATCATATATTAATATGCTCTTTATATAGTGGTA
ATATTACTATTGTGGAGAATGGTAAAAAATCAAAGCGTTTGTATCAAGGTATGCATTTCTTCGTTAATAAGGGAAAACAA
ATTAAGATAATTATTAATACGGATGAACCTGTATGGTATACTTTTGCTCTAGTATTGGAAGCCTTTATTATAAAATATAT
AAAAGATTTTTCATCCCAACCTTCATATATTCTATCTAAAGAAATTTTATTAAAACAAAATTATTTTAACACAGCAGAGT
TGCTTATGATCTTTGAACAATTAAAATATGCTATTAGAAACTGTGACCTTCCTTATATGTACTATATAGGTAAGGTATAC
GAAATTTTTGCTATTATTATACGAAATTTAGAAAATGAAGAGTATTTAAACATACCTCGCCATAATCATTTGAGCTATCA
AAATAAACAATTTATGTGGATTTTAAAGACAGAAATAGATAAAAATATATTAAATCCCCCTACAATTGAAGAAATGAAAA
ATATAGCTGAAATGAGCGAATCTAAACTTAGACGATGCTTCAAAGCAACTTATGGGAAAACAATTTATGAATATATTAAA
TATAAAAAAATGGAACAAGCAATTAGATTTCTATCCCATGATGAAATGAGTATACATAATATTTCTACTACCTTAGGTTA
TGAAAGCGCAAGTAAATTTTCAGCAGCATTTAAAAAAATTTACGGTATTACTCCTAGCGCATTTCGAAAATCCTTTAATC
TGTAA

Upstream 100 bases:

>100_bases
TACATTCATATAGGCATATAATTATACCGTTTTGGAGTATTTTTATATTGTTTAAAAAGATTATATATGATACCATCTAT
GATATATTATTATCAATTTA

Downstream 100 bases:

>100_bases
TTATGATTGAGAGCTAAAGCCTTATTGTCAGTTCCTAACTCTCACTATTAAGATAATCTCAGACTTTCATCAATAAGCTA
AGTTATTGCCAGTACTGAGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator AraC/YbtA; AraC Family Regulatory Protein; Transcriptional Regulatory Protein; Regulatory Helix-Turn-Helix Protein AraC Family; AraC Family Transcription Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MELNLELLSKMNYFINVLFIFTVLKLKLFWNNLKQIFIKNNLILKKKGFKSMKIDETMKVIKKFALQLNCKEYDYGNGRI
YRLPTENGDSWFVEVHPADGLLLSDAYFSLLKPLTYVYTIPENHILICSLYSGNITIVENGKKSKRLYQGMHFFVNKGKQ
IKIIINTDEPVWYTFALVLEAFIIKYIKDFSSQPSYILSKEILLKQNYFNTAELLMIFEQLKYAIRNCDLPYMYYIGKVY
EIFAIIIRNLENEEYLNIPRHNHLSYQNKQFMWILKTEIDKNILNPPTIEEMKNIAEMSESKLRRCFKATYGKTIYEYIK
YKKMEQAIRFLSHDEMSIHNISTTLGYESASKFSAAFKKIYGITPSAFRKSFNL

Sequences:

>Translated_374_residues
MELNLELLSKMNYFINVLFIFTVLKLKLFWNNLKQIFIKNNLILKKKGFKSMKIDETMKVIKKFALQLNCKEYDYGNGRI
YRLPTENGDSWFVEVHPADGLLLSDAYFSLLKPLTYVYTIPENHILICSLYSGNITIVENGKKSKRLYQGMHFFVNKGKQ
IKIIINTDEPVWYTFALVLEAFIIKYIKDFSSQPSYILSKEILLKQNYFNTAELLMIFEQLKYAIRNCDLPYMYYIGKVY
EIFAIIIRNLENEEYLNIPRHNHLSYQNKQFMWILKTEIDKNILNPPTIEEMKNIAEMSESKLRRCFKATYGKTIYEYIK
YKKMEQAIRFLSHDEMSIHNISTTLGYESASKFSAAFKKIYGITPSAFRKSFNL
>Mature_374_residues
MELNLELLSKMNYFINVLFIFTVLKLKLFWNNLKQIFIKNNLILKKKGFKSMKIDETMKVIKKFALQLNCKEYDYGNGRI
YRLPTENGDSWFVEVHPADGLLLSDAYFSLLKPLTYVYTIPENHILICSLYSGNITIVENGKKSKRLYQGMHFFVNKGKQ
IKIIINTDEPVWYTFALVLEAFIIKYIKDFSSQPSYILSKEILLKQNYFNTAELLMIFEQLKYAIRNCDLPYMYYIGKVY
EIFAIIIRNLENEEYLNIPRHNHLSYQNKQFMWILKTEIDKNILNPPTIEEMKNIAEMSESKLRRCFKATYGKTIYEYIK
YKKMEQAIRFLSHDEMSIHNISTTLGYESASKFSAAFKKIYGITPSAFRKSFNL

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44266; Mature: 44266

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELNLELLSKMNYFINVLFIFTVLKLKLFWNNLKQIFIKNNLILKKKGFKSMKIDETMKV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHH
IKKFALQLNCKEYDYGNGRIYRLPTENGDSWFVEVHPADGLLLSDAYFSLLKPLTYVYTI
HHHHHHHCCCCEEECCCCEEEECCCCCCCEEEEEEECCCCEEEHHHHHHHHCCHHEEEEC
PENHILICSLYSGNITIVENGKKSKRLYQGMHFFVNKGKQIKIIINTDEPVWYTFALVLE
CCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH
AFIIKYIKDFSSQPSYILSKEILLKQNYFNTAELLMIFEQLKYAIRNCDLPYMYYIGKVY
HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
EIFAIIIRNLENEEYLNIPRHNHLSYQNKQFMWILKTEIDKNILNPPTIEEMKNIAEMSE
HHHHHHHHCCCCCCEECCCCCCCCCCCCCEEEEEEEEHHCCCCCCCCCHHHHHHHHHHHH
SKLRRCFKATYGKTIYEYIKYKKMEQAIRFLSHDEMSIHNISTTLGYESASKFSAAFKKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCHHHHHHHHHHHH
YGITPSAFRKSFNL
HCCCHHHHHHCCCC
>Mature Secondary Structure
MELNLELLSKMNYFINVLFIFTVLKLKLFWNNLKQIFIKNNLILKKKGFKSMKIDETMKV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHH
IKKFALQLNCKEYDYGNGRIYRLPTENGDSWFVEVHPADGLLLSDAYFSLLKPLTYVYTI
HHHHHHHCCCCEEECCCCEEEECCCCCCCEEEEEEECCCCEEEHHHHHHHHCCHHEEEEC
PENHILICSLYSGNITIVENGKKSKRLYQGMHFFVNKGKQIKIIINTDEPVWYTFALVLE
CCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH
AFIIKYIKDFSSQPSYILSKEILLKQNYFNTAELLMIFEQLKYAIRNCDLPYMYYIGKVY
HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
EIFAIIIRNLENEEYLNIPRHNHLSYQNKQFMWILKTEIDKNILNPPTIEEMKNIAEMSE
HHHHHHHHCCCCCCEECCCCCCCCCCCCCEEEEEEEEHHCCCCCCCCCHHHHHHHHHHHH
SKLRRCFKATYGKTIYEYIKYKKMEQAIRFLSHDEMSIHNISTTLGYESASKFSAAFKKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCHHHHHHHHHHHH
YGITPSAFRKSFNL
HCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA