Click here to switch to the map view.

The map label for this gene is cpsA1 [H]

Identifier: 170756081

GI number: 170756081

Start: 1586164

End: 1587342

Strand: Direct

Name: cpsA1 [H]

Synonym: CLD_3120

Alternate gene names: 170756081

Gene position: 1586164-1587342 (Clockwise)

Preceding gene: 170755414

Following gene: 170757824

Centisome position: 40.07

GC content: 33.42

Gene sequence:

>1179_bases
ATGGGAGAAATAAATTTTTTAAAGGAAGCTTTAGATATAAAAGATGAAGTTATAAAATTGAGAAGAGATTTTCATGAGCA
TCCAGAATTAGATTATGATCTTTTTAGAACCTGTGAAAAAGTGAAAGAATTTTTAAAAAATCAAAATATAGAATATTACG
ACACAGCAGGTACAGGAATTTGTGCCATAATAAGAGGAAAAGGTCATAAAACTGTAGCCATAAGAGGGGATATGGATGCT
CTTCCACTTCAAGAAAAAAATATTTGTGATTATTCATCAAAAATAGAAGGGAAAATGCATGCCTGCGGACATGACGCCCA
TACTGCCATACTTTTGGGTGCTGCTAAAGTTTTAAATTCTATAAAGGATAAATTAAATGGGAATATAAAATTATTATTTG
AGCCTGCAGAAGAAACCACTGGTGGAGCTAGAATCATGATAAAAGAAGGAGTTCTTAAGGAACCAGATGTAGATGCTATT
ATAGGTCTTCATATGGAGGAAAAAATAAATACAGGAAAGATAGGATTAAGAAGGGGAGTAGTAAATGCAGCTTCAAATCC
CTTTACCATAAAAATAAAAGGAAAGGGTTCCCATGGAGCTAGGCCTAATAATTCTGTGGATCCTATAATTATAGCTAGTA
ATGTGGTAGTGGCTCTTCAAAACATAGTAAGCAGAGAATTGCCTCCTACAGATCCAGGGGTGTTAACTATAGGAACTATC
CATGGGGGTACAGCTCAAAATATAATACCAGATGAGGTTATACTATCTGGCATTATAAGAGTGATGAAAACTGAACATAG
AGAGTACGTTAAAAAAAGGTTGGTAGAAATAGTAGAAAATATATGTAAAGCTATGAGAGGTGAATGTGAAATAGATATAG
AGGAAAGTTATCCTTGCCTTTACAATAATGATGAAATGCTAAATAGCTTTATAAATTCTGCAAATGGTGTAATAGGAGAA
GATAACATAGAGATGTTAGAAGAACCAAGTATGGGAGTTGAAAGCTTTGCCTATTTCTCTATGGAAAAACCTTCGATATT
CTATTATTTAGGTTGCAGAAATGAAGAAAAGGGTATAGTATATCCTGCTCATAGTAGCTTATTTGATGTGGATGAGGATT
CTTTAGCATTAGGAGTAGCACTTCATTGCAAAGCTGCCTTTGATATTTTAAATTCATAA

Upstream 100 bases:

>100_bases
AAATGGGAATAGGCATAAACAGAGTTTAAATACAAATATACATTTTATAAATAAGAGATAAAATATTCAATTGCATTACT
TAAATAACTGGAGGGTAAAT

Downstream 100 bases:

>100_bases
TATAAGGGTAGTAATATAATTTAGATTAAATTTTAAAATAGGTTGTGAATATGAAGTGAAGAAAAAGATAGTTTTAGTTA
TGTGTGTTATTACTTTGTTA

Product: amidohydrolase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MGEINFLKEALDIKDEVIKLRRDFHEHPELDYDLFRTCEKVKEFLKNQNIEYYDTAGTGICAIIRGKGHKTVAIRGDMDA
LPLQEKNICDYSSKIEGKMHACGHDAHTAILLGAAKVLNSIKDKLNGNIKLLFEPAEETTGGARIMIKEGVLKEPDVDAI
IGLHMEEKINTGKIGLRRGVVNAASNPFTIKIKGKGSHGARPNNSVDPIIIASNVVVALQNIVSRELPPTDPGVLTIGTI
HGGTAQNIIPDEVILSGIIRVMKTEHREYVKKRLVEIVENICKAMRGECEIDIEESYPCLYNNDEMLNSFINSANGVIGE
DNIEMLEEPSMGVESFAYFSMEKPSIFYYLGCRNEEKGIVYPAHSSLFDVDEDSLALGVALHCKAAFDILNS

Sequences:

>Translated_392_residues
MGEINFLKEALDIKDEVIKLRRDFHEHPELDYDLFRTCEKVKEFLKNQNIEYYDTAGTGICAIIRGKGHKTVAIRGDMDA
LPLQEKNICDYSSKIEGKMHACGHDAHTAILLGAAKVLNSIKDKLNGNIKLLFEPAEETTGGARIMIKEGVLKEPDVDAI
IGLHMEEKINTGKIGLRRGVVNAASNPFTIKIKGKGSHGARPNNSVDPIIIASNVVVALQNIVSRELPPTDPGVLTIGTI
HGGTAQNIIPDEVILSGIIRVMKTEHREYVKKRLVEIVENICKAMRGECEIDIEESYPCLYNNDEMLNSFINSANGVIGE
DNIEMLEEPSMGVESFAYFSMEKPSIFYYLGCRNEEKGIVYPAHSSLFDVDEDSLALGVALHCKAAFDILNS
>Mature_391_residues
GEINFLKEALDIKDEVIKLRRDFHEHPELDYDLFRTCEKVKEFLKNQNIEYYDTAGTGICAIIRGKGHKTVAIRGDMDAL
PLQEKNICDYSSKIEGKMHACGHDAHTAILLGAAKVLNSIKDKLNGNIKLLFEPAEETTGGARIMIKEGVLKEPDVDAII
GLHMEEKINTGKIGLRRGVVNAASNPFTIKIKGKGSHGARPNNSVDPIIIASNVVVALQNIVSRELPPTDPGVLTIGTIH
GGTAQNIIPDEVILSGIIRVMKTEHREYVKKRLVEIVENICKAMRGECEIDIEESYPCLYNNDEMLNSFINSANGVIGED
NIEMLEEPSMGVESFAYFSMEKPSIFYYLGCRNEEKGIVYPAHSSLFDVDEDSLALGVALHCKAAFDILNS

Specific function: Can release basic, acidic, aromatic, and, to a lesser extent, aliphatic amino acids [H]

COG id: COG1473

COG function: function code R; Metal-dependent amidase/aminoacylase/carboxypeptidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20 family [H]

Homologues:

Organism=Escherichia coli, GI87081880, Length=426, Percent_Identity=25.5868544600939, Blast_Score=90, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017439
- InterPro:   IPR010168
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: NA

Molecular weight: Translated: 43330; Mature: 43199

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEINFLKEALDIKDEVIKLRRDFHEHPELDYDLFRTCEKVKEFLKNQNIEYYDTAGTGI
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCE
CAIIRGKGHKTVAIRGDMDALPLQEKNICDYSSKIEGKMHACGHDAHTAILLGAAKVLNS
EEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCHHCCCCCCHHHHHHHHHHHHHH
IKDKLNGNIKLLFEPAEETTGGARIMIKEGVLKEPDVDAIIGLHMEEKINTGKIGLRRGV
HHHHHCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCEEECCHHHCCCCCCHHHHHHH
VNAASNPFTIKIKGKGSHGARPNNSVDPIIIASNVVVALQNIVSRELPPTDPGVLTIGTI
HHCCCCCEEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCEEEEEEE
HGGTAQNIIPDEVILSGIIRVMKTEHREYVKKRLVEIVENICKAMRGECEIDIEESYPCL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCE
YNNDEMLNSFINSANGVIGEDNIEMLEEPSMGVESFAYFSMEKPSIFYYLGCRNEEKGIV
ECCHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHEEEEECCCCEEEEEECCCCCCCEE
YPAHSSLFDVDEDSLALGVALHCKAAFDILNS
EECCCCCCCCCCCCEEEEHEEHHHHHHHHHCC
>Mature Secondary Structure 
GEINFLKEALDIKDEVIKLRRDFHEHPELDYDLFRTCEKVKEFLKNQNIEYYDTAGTGI
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCE
CAIIRGKGHKTVAIRGDMDALPLQEKNICDYSSKIEGKMHACGHDAHTAILLGAAKVLNS
EEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCHHCCCCCCHHHHHHHHHHHHHH
IKDKLNGNIKLLFEPAEETTGGARIMIKEGVLKEPDVDAIIGLHMEEKINTGKIGLRRGV
HHHHHCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCEEECCHHHCCCCCCHHHHHHH
VNAASNPFTIKIKGKGSHGARPNNSVDPIIIASNVVVALQNIVSRELPPTDPGVLTIGTI
HHCCCCCEEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCEEEEEEE
HGGTAQNIIPDEVILSGIIRVMKTEHREYVKKRLVEIVENICKAMRGECEIDIEESYPCL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCE
YNNDEMLNSFINSANGVIGEDNIEMLEEPSMGVESFAYFSMEKPSIFYYLGCRNEEKGIV
ECCHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHEEEEECCCCEEEEEECCCCCCCEE
YPAHSSLFDVDEDSLALGVALHCKAAFDILNS
EECCCCCCCCCCCCEEEEHEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7559343; 11427726; 1597179 [H]