Definition Clostridium botulinum B1 str. Okra, complete genome.
Accession NC_010516
Length 3,958,233

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The map label for this gene is yrrL [H]

Identifier: 170755981

GI number: 170755981

Start: 2725411

End: 2726442

Strand: Reverse

Name: yrrL [H]

Synonym: CLD_2008

Alternate gene names: 170755981

Gene position: 2726442-2725411 (Counterclockwise)

Preceding gene: 170757533

Following gene: 170754291

Centisome position: 68.88

GC content: 27.33

Gene sequence:

>1032_bases
ATGAAAAATAAAAACAGGCTAATTATTTTAGGAATGGCTATAGTTGCAGTTTTAGCTATAGGTTTTGTATCCATTAAGTA
TTATGACAGAAAAATTTTAAGAGCTCCATTAAAAGTAGCGGAAAATGGAGTCATTAATGTTGTTGTAGACAAGGACCAGA
GTTTAAATGAAGTTATAGAAAAAATAGATAAAGAAGGAAAAATTAAAAGTAAAAGAGTATTAAAAAATTATATTAAGAAA
GTACAAGCACCACAAAAGGTAGTTCCAGGAGAATATGTATTTTCTGCTAATTTAAATGCTTATGATTTATTGCTTAATTT
AAAGGACGGTATATATGATAATAGACCTATAAAAGTTACTATTCCAGAAGGGTGTAATATAGATGAAATAGGAAATAAAT
TAGAGAAACAGGGAATAATAAAGAAAGAAGATTTTATAAAAAGTGTAAAAGAATACAAAGTCCCTTCTTTTGCAAAGGAA
GATAAAAACAGGAAATATCCTTTGGAGGGGTACTTATTCCCAGATACTTACGAGTTTTTTAAAGGTATGCAAGGAGATAA
AATAATAGATAAAATGCTAGACAGGTTTAATTATGTTATTAAAGAAATAGAAAAAGAAAATAATATAAAAATAAAAGATG
AAGACATAGATAGATTAATTAGCATGGCATCTGTTATAGAGAAAGAAGCTGAAAAAGATAGTGAAAGAGGTAAGGTGGCC
TCTGTATTTTATAATAGAATAGATAAAAAAATGAAGATGGAATCCTGCGCTACAGTATTGTATGCATTAGGATATCATAA
AGACAAATTATATTATAAAGATCTAAAAATAAAGTCTCCTTATAATACTTATTTGAATATGGGATTACCTATAGGACCTA
TATGTTCTCCAGGTAAAAGTTCCATAAAGGCAGCATTAAATCCAGAAAAAACAGATTATATATATTTTGTTTCTAAAAAT
GATGGAACTCACTTTTTTACAAAGAACTATAACGATTTTTTAAAGGTGAAAAAGGAAACTCAAGGAGATTAA

Upstream 100 bases:

>100_bases
AAGCTACAATAAGAAAAAAATAAATAGTCATTATAATTCTAAACGAACAACTAGCTTAGAGCTGGTTGTTTGTCTATATT
AACCTATGGGTGGTGATTTT

Downstream 100 bases:

>100_bases
TATATTTTGCTGCAGGTGACCTACAATATTTTAAAATTAAAAGGTCACCTTGTGTATTATTAGTTTTAAATTGGAGGTAA
ATATGAGTAAAGTAGCCTAT

Product: hypothetical protein

Products: 4-aminobenzoate; pyruvate

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MKNKNRLIILGMAIVAVLAIGFVSIKYYDRKILRAPLKVAENGVINVVVDKDQSLNEVIEKIDKEGKIKSKRVLKNYIKK
VQAPQKVVPGEYVFSANLNAYDLLLNLKDGIYDNRPIKVTIPEGCNIDEIGNKLEKQGIIKKEDFIKSVKEYKVPSFAKE
DKNRKYPLEGYLFPDTYEFFKGMQGDKIIDKMLDRFNYVIKEIEKENNIKIKDEDIDRLISMASVIEKEAEKDSERGKVA
SVFYNRIDKKMKMESCATVLYALGYHKDKLYYKDLKIKSPYNTYLNMGLPIGPICSPGKSSIKAALNPEKTDYIYFVSKN
DGTHFFTKNYNDFLKVKKETQGD

Sequences:

>Translated_343_residues
MKNKNRLIILGMAIVAVLAIGFVSIKYYDRKILRAPLKVAENGVINVVVDKDQSLNEVIEKIDKEGKIKSKRVLKNYIKK
VQAPQKVVPGEYVFSANLNAYDLLLNLKDGIYDNRPIKVTIPEGCNIDEIGNKLEKQGIIKKEDFIKSVKEYKVPSFAKE
DKNRKYPLEGYLFPDTYEFFKGMQGDKIIDKMLDRFNYVIKEIEKENNIKIKDEDIDRLISMASVIEKEAEKDSERGKVA
SVFYNRIDKKMKMESCATVLYALGYHKDKLYYKDLKIKSPYNTYLNMGLPIGPICSPGKSSIKAALNPEKTDYIYFVSKN
DGTHFFTKNYNDFLKVKKETQGD
>Mature_343_residues
MKNKNRLIILGMAIVAVLAIGFVSIKYYDRKILRAPLKVAENGVINVVVDKDQSLNEVIEKIDKEGKIKSKRVLKNYIKK
VQAPQKVVPGEYVFSANLNAYDLLLNLKDGIYDNRPIKVTIPEGCNIDEIGNKLEKQGIIKKEDFIKSVKEYKVPSFAKE
DKNRKYPLEGYLFPDTYEFFKGMQGDKIIDKMLDRFNYVIKEIEKENNIKIKDEDIDRLISMASVIEKEAEKDSERGKVA
SVFYNRIDKKMKMESCATVLYALGYHKDKLYYKDLKIKSPYNTYLNMGLPIGPICSPGKSSIKAALNPEKTDYIYFVSKN
DGTHFFTKNYNDFLKVKKETQGD

Specific function: Unknown

COG id: COG1559

COG function: function code R; Predicted periplasmic solute-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0755 family [H]

Homologues:

Organism=Escherichia coli, GI1787339, Length=258, Percent_Identity=32.1705426356589, Blast_Score=128, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003770 [H]

Pfam domain/function: PF02618 ADC_lyase [H]

EC number: 4.1.3.38

Molecular weight: Translated: 39457; Mature: 39457

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKNRLIILGMAIVAVLAIGFVSIKYYDRKILRAPLKVAENGVINVVVDKDQSLNEVIE
CCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
KIDKEGKIKSKRVLKNYIKKVQAPQKVVPGEYVFSANLNAYDLLLNLKDGIYDNRPIKVT
HHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCEEEE
IPEGCNIDEIGNKLEKQGIIKKEDFIKSVKEYKVPSFAKEDKNRKYPLEGYLFPDTYEFF
CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEECCCHHHHH
KGMQGDKIIDKMLDRFNYVIKEIEKENNIKIKDEDIDRLISMASVIEKEAEKDSERGKVA
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHCCHHH
SVFYNRIDKKMKMESCATVLYALGYHKDKLYYKDLKIKSPYNTYLNMGLPIGPICSPGKS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECEEECCCHHHHHCCCCCCCCCCCCCHH
SIKAALNPEKTDYIYFVSKNDGTHFFTKNYNDFLKVKKETQGD
HHHCCCCCCCCEEEEEEECCCCCEEEECCCHHHHHHHHHCCCC
>Mature Secondary Structure
MKNKNRLIILGMAIVAVLAIGFVSIKYYDRKILRAPLKVAENGVINVVVDKDQSLNEVIE
CCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
KIDKEGKIKSKRVLKNYIKKVQAPQKVVPGEYVFSANLNAYDLLLNLKDGIYDNRPIKVT
HHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCEEEE
IPEGCNIDEIGNKLEKQGIIKKEDFIKSVKEYKVPSFAKEDKNRKYPLEGYLFPDTYEFF
CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEECCCHHHHH
KGMQGDKIIDKMLDRFNYVIKEIEKENNIKIKDEDIDRLISMASVIEKEAEKDSERGKVA
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHCCHHH
SVFYNRIDKKMKMESCATVLYALGYHKDKLYYKDLKIKSPYNTYLNMGLPIGPICSPGKS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECEEECCCHHHHHCCCCCCCCCCCCCHH
SIKAALNPEKTDYIYFVSKNDGTHFFTKNYNDFLKVKKETQGD
HHHCCCCCCCCEEEEEEECCCCCEEEECCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 4-amino-4-deoxychorismate

Specific reaction: 4-amino-4-deoxychorismate = 4-aminobenzoate + pyruvate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]