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The map label for this gene is rpfG [H]

Identifier: 170755695

GI number: 170755695

Start: 496356

End: 497414

Strand: Direct

Name: rpfG [H]

Synonym: CLD_0352

Alternate gene names: 170755695

Gene position: 496356-497414 (Clockwise)

Preceding gene: 170754652

Following gene: 170756233

Centisome position: 12.54

GC content: 27.48

Gene sequence:

>1059_bases
ATGATAATGCGACTTGAATTTATTAATAGAGTTAAAGAAAATGATGTTTTAGGAAGAAATATTTTTTCCGAAGATGGACA
AGTTTTACTTAAATCTGGTATTAAGTTAACAGGAAATTACATAAAAAAATTAAAAAATCTAGGTGTTTTTTATATTTATA
TACGGGATGAAAGATTAGAAGATGTAGTAATAGATGATCCTAAATTAATGGAACTTAAGCAAACTACTATGAAATCTATG
ACTGATCTTATGAAAAACATACATGATTTTAATGGTAAAAGCTTAAAGAGATCCTTTAATCAAGTGGAAGAAATGATAGA
TTATATAATAGATATGGGGGACGTAAATAGAAGTCTTTATGATATTAAAACCTATGATAATTATACATATATACATAGCT
TAGATACTTGTATAATGACTACATTTATAGGCTTATCTAGTGGATTAAATGAAAAGGAATTAAAGGATGTAGGTATAGGG
GCAATACTTCACGATATAGGAAAAACTCGAATATCTAATAAAATAATAAATAAAAAAGGTCCATTAACAGATGATGAATT
TATAGAAATAAAAAAACACCCTATTTATGGTAGTGAAATACTAAAAAAAGATTTTACAATGTCTGATACAATTATAAAAA
TAGTAGAACAACACCATGAAAGAATAGACGGTAAAGGATACCCCTATGGACTTAAAAGAAATGACATTTCTAAATACGCA
AAATTAGTTTCCATATGTGATGTATATGATGCCATAAGCAATGATAGATGCTATAGAAAGAAATTTACTCCTAATGATGC
CTATGAGCTTATATTATCTGGATCAGGAACTATGTTTGATGAGAATTTGGTTAAATCATTTAAAAATACCTTCGCTATAT
ATCCTTTAGGTTGTAGGATTAGATTATCAAACGGAGAAGAAGGATATGTGATAAACCAAAATAAGGGGTTCCCAGATAGA
CCTATAATTAGAATTTTTAGAGATAGCAATATGAAACGTTTTGGAGAGATAAATTTGCTTAAAAGTCCTAGTCTAGTTAT
AAGATCTCTAGTTATGTAA

Upstream 100 bases:

>100_bases
AAAGGGTTTTATAAAATATAAATAAAAAGTATAAATAACAATGTTTTCTAATTATATTTGTTATATTTTTAGGCGGATTA
ATATAGGTTATGAGGTGTTT

Downstream 100 bases:

>100_bases
AGATTGTTAATATGAGTATAAGCACAACATAAAATTTAAATTATATGTTGTGCTTATTTGTATAATAATATATATTGGGT
AATAGAAAGAAAATTTTTTA

Product: HD domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MIMRLEFINRVKENDVLGRNIFSEDGQVLLKSGIKLTGNYIKKLKNLGVFYIYIRDERLEDVVIDDPKLMELKQTTMKSM
TDLMKNIHDFNGKSLKRSFNQVEEMIDYIIDMGDVNRSLYDIKTYDNYTYIHSLDTCIMTTFIGLSSGLNEKELKDVGIG
AILHDIGKTRISNKIINKKGPLTDDEFIEIKKHPIYGSEILKKDFTMSDTIIKIVEQHHERIDGKGYPYGLKRNDISKYA
KLVSICDVYDAISNDRCYRKKFTPNDAYELILSGSGTMFDENLVKSFKNTFAIYPLGCRIRLSNGEEGYVINQNKGFPDR
PIIRIFRDSNMKRFGEINLLKSPSLVIRSLVM

Sequences:

>Translated_352_residues
MIMRLEFINRVKENDVLGRNIFSEDGQVLLKSGIKLTGNYIKKLKNLGVFYIYIRDERLEDVVIDDPKLMELKQTTMKSM
TDLMKNIHDFNGKSLKRSFNQVEEMIDYIIDMGDVNRSLYDIKTYDNYTYIHSLDTCIMTTFIGLSSGLNEKELKDVGIG
AILHDIGKTRISNKIINKKGPLTDDEFIEIKKHPIYGSEILKKDFTMSDTIIKIVEQHHERIDGKGYPYGLKRNDISKYA
KLVSICDVYDAISNDRCYRKKFTPNDAYELILSGSGTMFDENLVKSFKNTFAIYPLGCRIRLSNGEEGYVINQNKGFPDR
PIIRIFRDSNMKRFGEINLLKSPSLVIRSLVM
>Mature_352_residues
MIMRLEFINRVKENDVLGRNIFSEDGQVLLKSGIKLTGNYIKKLKNLGVFYIYIRDERLEDVVIDDPKLMELKQTTMKSM
TDLMKNIHDFNGKSLKRSFNQVEEMIDYIIDMGDVNRSLYDIKTYDNYTYIHSLDTCIMTTFIGLSSGLNEKELKDVGIG
AILHDIGKTRISNKIINKKGPLTDDEFIEIKKHPIYGSEILKKDFTMSDTIIKIVEQHHERIDGKGYPYGLKRNDISKYA
KLVSICDVYDAISNDRCYRKKFTPNDAYELILSGSGTMFDENLVKSFKNTFAIYPLGCRIRLSNGEEGYVINQNKGFPDR
PIIRIFRDSNMKRFGEINLLKSPSLVIRSLVM

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 40646; Mature: 40646

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMRLEFINRVKENDVLGRNIFSEDGQVLLKSGIKLTGNYIKKLKNLGVFYIYIRDERLE
CEEEEHHHHHHHHCCCCCCHHHCCCCHHHHHCCCEEHHHHHHHHHCCCEEEEEEECCCCC
DVVIDDPKLMELKQTTMKSMTDLMKNIHDFNGKSLKRSFNQVEEMIDYIIDMGDVNRSLY
CEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEE
DIKTYDNYTYIHSLDTCIMTTFIGLSSGLNEKELKDVGIGAILHDIGKTRISNKIINKKG
EEEECCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PLTDDEFIEIKKHPIYGSEILKKDFTMSDTIIKIVEQHHERIDGKGYPYGLKRNDISKYA
CCCCCHHEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
KLVSICDVYDAISNDRCYRKKFTPNDAYELILSGSGTMFDENLVKSFKNTFAIYPLGCRI
HHHHHHHHHHHHCCCCCEECCCCCCCHHEEEECCCCCCHHHHHHHHHHHCEEEEEECEEE
RLSNGEEGYVINQNKGFPDRPIIRIFRDSNMKRFGEINLLKSPSLVIRSLVM
EECCCCCCEEEECCCCCCCCCEEEEEECCCCCHHCCEEEECCHHHHHHHHCC
>Mature Secondary Structure
MIMRLEFINRVKENDVLGRNIFSEDGQVLLKSGIKLTGNYIKKLKNLGVFYIYIRDERLE
CEEEEHHHHHHHHCCCCCCHHHCCCCHHHHHCCCEEHHHHHHHHHCCCEEEEEEECCCCC
DVVIDDPKLMELKQTTMKSMTDLMKNIHDFNGKSLKRSFNQVEEMIDYIIDMGDVNRSLY
CEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEE
DIKTYDNYTYIHSLDTCIMTTFIGLSSGLNEKELKDVGIGAILHDIGKTRISNKIINKKG
EEEECCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PLTDDEFIEIKKHPIYGSEILKKDFTMSDTIIKIVEQHHERIDGKGYPYGLKRNDISKYA
CCCCCHHEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
KLVSICDVYDAISNDRCYRKKFTPNDAYELILSGSGTMFDENLVKSFKNTFAIYPLGCRI
HHHHHHHHHHHHCCCCCEECCCCCCCHHEEEECCCCCCHHHHHHHHHHHCEEEEEECEEE
RLSNGEEGYVINQNKGFPDRPIIRIFRDSNMKRFGEINLLKSPSLVIRSLVM
EECCCCCCEEEECCCCCCCCCEEEEEECCCCCHHCCEEEECCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]