| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170755623
Identifier: 170755623
GI number: 170755623
Start: 2388435
End: 2389256
Strand: Reverse
Name: 170755623
Synonym: CLD_2380
Alternate gene names: NA
Gene position: 2389256-2388435 (Counterclockwise)
Preceding gene: 170755765
Following gene: 170756410
Centisome position: 60.36
GC content: 27.86
Gene sequence:
>822_bases TTGATGAATAAAAAAATAAACACAATGTATTTTAGTGGTACGGATACAACTAAAAAAGTAGTATGTGGTATAGGAAAAAC ACTTTCAGAAAATTTTCAGATAAAAGAAAAGATAAATAATGTTGATTTTACATTACCAAAGGTAAGAGGAAAAGTAGTGT CTTTTTCAGAAGAGGATATTGTTATAGTGGGAGTTCCTGTTTACGCAGGAAGAGTTCCTAATGTACTTTTAAAGTATCTA AAAACTATTTCTGGTAATGGTGCATTGGCTATAGCAATAGTGCTTTATGGAAATAGAAATTATGATGATGCATTAATAGA ACTAAAAGACATATTAGAATTAGATGGTTTTAAAGTTGTTGCAGGGGCTGCATTTATAGGTGAACATTCTTTTTCAAATA ACCTTGCCAAAAATAGACCAGATGAAAAAGATATGGATATAGTTAGGATTCTTGCTGATGAAATATATACAAAGATTATA AGTGAAAAAATAATAAAAACAGTATTTGTAAAGGGAAATACCCCTTATAGAAAATATTATATGCCAAAGGATGAAAAAGG CCAGCCTATTGATATAAGAAAAGTTAAACCAAAAACGAATAATAATTGTATAAATTGCAAGCTTTGTGCAAATCTTTGCC CTATAGGATCTATTGATTTTGAGGATGTAACTAAACTAAATGAGATTTGTATTAAATGTTGTGCCTGCATTAAAAAATGT CCTGTAGGAGCAAAATATTTTGATGATAGTGGATATTTAAAACATAAAAAAGAACTAGAAAATAATTTTAGATATAGAAA AGAACCAGAATTATTTATTTAA
Upstream 100 bases:
>100_bases AAAATACATAAGTCTTTATTGAATTTCATATATAATTATACATATCTAATACTTTTTATAACATAAAATATTTTGATACA CCTATAGGAGGGAGAAAACC
Downstream 100 bases:
>100_bases TGTAATTTTAAATATACTTCCCACATATATATCTATATAGATTTTTTTAATAAGAATATAATAAATTTTTTTAAATGGTA TTAAAAGAAGTTTTAATAAA
Product: iron-sulfur cluster-binding protein
Products: NA
Alternate protein names: 4Fe-4S Ferredoxin; Flavodoxin; Flavodoxin/Nitric Oxide Synthase; Iron-Sulfur Proteins
Number of amino acids: Translated: 273; Mature: 273
Protein sequence:
>273_residues MMNKKINTMYFSGTDTTKKVVCGIGKTLSENFQIKEKINNVDFTLPKVRGKVVSFSEEDIVIVGVPVYAGRVPNVLLKYL KTISGNGALAIAIVLYGNRNYDDALIELKDILELDGFKVVAGAAFIGEHSFSNNLAKNRPDEKDMDIVRILADEIYTKII SEKIIKTVFVKGNTPYRKYYMPKDEKGQPIDIRKVKPKTNNNCINCKLCANLCPIGSIDFEDVTKLNEICIKCCACIKKC PVGAKYFDDSGYLKHKKELENNFRYRKEPELFI
Sequences:
>Translated_273_residues MMNKKINTMYFSGTDTTKKVVCGIGKTLSENFQIKEKINNVDFTLPKVRGKVVSFSEEDIVIVGVPVYAGRVPNVLLKYL KTISGNGALAIAIVLYGNRNYDDALIELKDILELDGFKVVAGAAFIGEHSFSNNLAKNRPDEKDMDIVRILADEIYTKII SEKIIKTVFVKGNTPYRKYYMPKDEKGQPIDIRKVKPKTNNNCINCKLCANLCPIGSIDFEDVTKLNEICIKCCACIKKC PVGAKYFDDSGYLKHKKELENNFRYRKEPELFI >Mature_273_residues MMNKKINTMYFSGTDTTKKVVCGIGKTLSENFQIKEKINNVDFTLPKVRGKVVSFSEEDIVIVGVPVYAGRVPNVLLKYL KTISGNGALAIAIVLYGNRNYDDALIELKDILELDGFKVVAGAAFIGEHSFSNNLAKNRPDEKDMDIVRILADEIYTKII SEKIIKTVFVKGNTPYRKYYMPKDEKGQPIDIRKVKPKTNNNCINCKLCANLCPIGSIDFEDVTKLNEICIKCCACIKKC PVGAKYFDDSGYLKHKKELENNFRYRKEPELFI
Specific function: Unknown
COG id: COG1145
COG function: function code C; Ferredoxin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30846; Mature: 30846
Theoretical pI: Translated: 9.03; Mature: 9.03
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 3.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMNKKINTMYFSGTDTTKKVVCGIGKTLSENFQIKEKINNVDFTLPKVRGKVVSFSEEDI CCCCEEEEEEECCCCCHHHHHHHCCCHHHCCCCHHHHHCCCCEECHHHCCEEEEECCCCE VIVGVPVYAGRVPNVLLKYLKTISGNGALAIAIVLYGNRNYDDALIELKDILELDGFKVV EEEECCHHCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCEEEE AGAAFIGEHSFSNNLAKNRPDEKDMDIVRILADEIYTKIISEKIIKTVFVKGNTPYRKYY EEEHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEE MPKDEKGQPIDIRKVKPKTNNNCINCKLCANLCPIGSIDFEDVTKLNEICIKCCACIKKC CCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC PVGAKYFDDSGYLKHKKELENNFRYRKEPELFI CCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MMNKKINTMYFSGTDTTKKVVCGIGKTLSENFQIKEKINNVDFTLPKVRGKVVSFSEEDI CCCCEEEEEEECCCCCHHHHHHHCCCHHHCCCCHHHHHCCCCEECHHHCCEEEEECCCCE VIVGVPVYAGRVPNVLLKYLKTISGNGALAIAIVLYGNRNYDDALIELKDILELDGFKVV EEEECCHHCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCEEEE AGAAFIGEHSFSNNLAKNRPDEKDMDIVRILADEIYTKIISEKIIKTVFVKGNTPYRKYY EEEHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEE MPKDEKGQPIDIRKVKPKTNNNCINCKLCANLCPIGSIDFEDVTKLNEICIKCCACIKKC CCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC PVGAKYFDDSGYLKHKKELENNFRYRKEPELFI CCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA