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The map label for this gene is atpD [H]

Identifier: 170755537

GI number: 170755537

Start: 2803190

End: 2803840

Strand: Reverse

Name: atpD [H]

Synonym: CLD_1942

Alternate gene names: 170755537

Gene position: 2803840-2803190 (Counterclockwise)

Preceding gene: 170754730

Following gene: 170756373

Centisome position: 70.84

GC content: 31.49

Gene sequence:

>651_bases
ATGAAATTAAATGTAAACCCTACTAGAATGGAGCTCACTAAACTTAAAAAGAGGTTAACGACAGCCACCAGAGGACATAA
ACTTTTAAAAGATAAGCAAGATGAGCTTATGAGAAGATTCATAGGTATGATAAAAAAGAATAATGAACTTAGAAAAGATG
TAGAGAAGGAATTAGAAGGATCTTTTAAAGATTTTTTAATGGCTAGTGCGGTTATGTCTCCAGAGTTTTTGGAGGAAGCC
GTAGCTTATCCAAAGGAAAGTATTTCTGTAGATGTTAAAAAGCAAAACATAATGAGTGTTAATGTGCCTGTGTTTGACTT
CAAAAGAAAGTTAGAAGGAGATAAAGGAAGTATATTCCCTTATGGTTTTGCCAATACTTCTGCTGAATTAGATGGTGCTA
TAGAAAAATTATATGGTATATTACCTAAGCTTTTAGAATTAGCTAAAGTAGAAAAAGCATGTCAACTAATGGCGGATGAA
ATTGAAAAAACTAGAAGAAGAGTTAACGCTCTAGAATATATGACTATACCTCAACTAGAGGAAACTATAAGATTTATACA
AATGAAGTTAGATGAAAATGAAAGAAGTACAGTAACAAGACTTATGAAAATCAAGAGTATGATGGAAGAAAAGCAAAGTA
ATATGGTATAA

Upstream 100 bases:

>100_bases
AAGTCAGAGCTTAAGAGAATAAGAGATGAATATCTAGAAAAATATTTAAGTAAAGCTGAAGAAAGCAAATAATAACCATT
AAAAGGGATGAGTGATCTTT

Downstream 100 bases:

>100_bases
AAAAAGCAGCGAAAATCGCTGCTTTTTTTATACAAAGTAAGTATGTTTTGCTTTAAAATTAATGAGTAGCTATATATGGT
AAAAATAGTTTTAATAAAAT

Product: V-type ATP synthase subunit D

Products: ADP; phosphate; H+

Alternate protein names: V-ATPase subunit D [H]

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MKLNVNPTRMELTKLKKRLTTATRGHKLLKDKQDELMRRFIGMIKKNNELRKDVEKELEGSFKDFLMASAVMSPEFLEEA
VAYPKESISVDVKKQNIMSVNVPVFDFKRKLEGDKGSIFPYGFANTSAELDGAIEKLYGILPKLLELAKVEKACQLMADE
IEKTRRRVNALEYMTIPQLEETIRFIQMKLDENERSTVTRLMKIKSMMEEKQSNMV

Sequences:

>Translated_216_residues
MKLNVNPTRMELTKLKKRLTTATRGHKLLKDKQDELMRRFIGMIKKNNELRKDVEKELEGSFKDFLMASAVMSPEFLEEA
VAYPKESISVDVKKQNIMSVNVPVFDFKRKLEGDKGSIFPYGFANTSAELDGAIEKLYGILPKLLELAKVEKACQLMADE
IEKTRRRVNALEYMTIPQLEETIRFIQMKLDENERSTVTRLMKIKSMMEEKQSNMV
>Mature_216_residues
MKLNVNPTRMELTKLKKRLTTATRGHKLLKDKQDELMRRFIGMIKKNNELRKDVEKELEGSFKDFLMASAVMSPEFLEEA
VAYPKESISVDVKKQNIMSVNVPVFDFKRKLEGDKGSIFPYGFANTSAELDGAIEKLYGILPKLLELAKVEKACQLMADE
IEKTRRRVNALEYMTIPQLEETIRFIQMKLDENERSTVTRLMKIKSMMEEKQSNMV

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane [H]

COG id: COG1394

COG function: function code C; Archaeal/vacuolar-type H+-ATPase subunit D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the V-ATPase D subunit family [H]

Homologues:

Organism=Homo sapiens, GI7706757, Length=207, Percent_Identity=31.4009661835749, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17553636, Length=211, Percent_Identity=32.7014218009479, Blast_Score=82, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6320784, Length=207, Percent_Identity=28.0193236714976, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI20128937, Length=217, Percent_Identity=31.7972350230415, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI21355551, Length=209, Percent_Identity=33.0143540669856, Blast_Score=82, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002699 [H]

Pfam domain/function: PF01813 ATP-synt_D [H]

EC number: 3.6.3.14

Molecular weight: Translated: 25032; Mature: 25032

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
6.5 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNVNPTRMELTKLKKRLTTATRGHKLLKDKQDELMRRFIGMIKKNNELRKDVEKELEG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
SFKDFLMASAVMSPEFLEEAVAYPKESISVDVKKQNIMSVNVPVFDFKRKLEGDKGSIFP
HHHHHHHHHHHCCHHHHHHHHHCCHHHCEEEEECCCEEECCCCHHHHHHHHCCCCCCCCC
YGFANTSAELDGAIEKLYGILPKLLELAKVEKACQLMADEIEKTRRRVNALEYMTIPQLE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
ETIRFIQMKLDENERSTVTRLMKIKSMMEEKQSNMV
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLNVNPTRMELTKLKKRLTTATRGHKLLKDKQDELMRRFIGMIKKNNELRKDVEKELEG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
SFKDFLMASAVMSPEFLEEAVAYPKESISVDVKKQNIMSVNVPVFDFKRKLEGDKGSIFP
HHHHHHHHHHHCCHHHHHHHHHCCHHHCEEEEECCCEEECCCCHHHHHHHHCCCCCCCCC
YGFANTSAELDGAIEKLYGILPKLLELAKVEKACQLMADEIEKTRRRVNALEYMTIPQLE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
ETIRFIQMKLDENERSTVTRLMKIKSMMEEKQSNMV
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA