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The map label for this gene is ligA [H]

Identifier: 170755519

GI number: 170755519

Start: 3461389

End: 3462117

Strand: Reverse

Name: ligA [H]

Synonym: CLD_1345

Alternate gene names: 170755519

Gene position: 3462117-3461389 (Counterclockwise)

Preceding gene: 170755872

Following gene: 170756136

Centisome position: 87.47

GC content: 21.95

Gene sequence:

>729_bases
ATGGATAATATAAACTTCATAAATAGAATTAAAAACATGGTAGGAGAGAAAGGAATAAATATTAAAGAGTTAAATGATGA
AACCATAAATATTTTATTTGAAAATGGATTTTTAAATAATGCTTATGATATCTTTTTATTAAAAAAAGAAGAACTATATA
AAATAGATGGTTTTACAAAAGAATATGTAGATGAACTTATAAAATCTATTAATAAAACTAAAAATTGTAACTTTGAAAAA
TTTATATATGCATGTTCTATACCTAAAGTTACAGAAAAAGAAGCCATAGTTATTGCTCACACTTTTTTAAATTTTACAGA
TTTAGTAATAGATATAAACAATAACGATTGTGATAGATTAAAAAGAATAGATGGAATGAGTGAAGAAATAGTAGAAAGTA
TAAAAAGAAATAAGGTTCTTTTAGTTAATTTATTTATGTATGTTAATCCAATTTCTATAGATGAAAAAAATGCAAATATT
AAGAGATATAAATTCTCTATAACAGGAGTACTAAATAAGGATACAAGTTATTATGAGGAAATGATAAAGGAAGCTAATTG
TATAGTGGTAGATAATGTAACAAAGGACGTGGATTATTTGGTATTTGGTGATTTAGCTAATGCTATTAAAATGATGGATG
CTAAAAAATATAATACTAGATTAATATCAGAACGTCAATTAGTAGATATATTAAAGGAAATTAAAGAGAATAATAAAATG
AAAAATTAA

Upstream 100 bases:

>100_bases
TTTGAGTAATTTAGCAAAAGAAGATTTAATAAAAAAAATTTTGAATTTAGAAAAAGAAATTTAAGGTGTAAATATATATA
ACAAAGATGGGGAGATATAG

Downstream 100 bases:

>100_bases
AAATTGTAAAACAAATAAATAGCAAAAACTATTGATATATCAAGTTATCAATAGTTTTTTTGTTCCAATAAACTTAGTTA
TAAGTAAAAAATTTAAAATC

Product: BRCT domain-containing protein

Products: NA

Alternate protein names: Polydeoxyribonucleotide synthase [NAD+] [H]

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MDNINFINRIKNMVGEKGINIKELNDETINILFENGFLNNAYDIFLLKKEELYKIDGFTKEYVDELIKSINKTKNCNFEK
FIYACSIPKVTEKEAIVIAHTFLNFTDLVIDINNNDCDRLKRIDGMSEEIVESIKRNKVLLVNLFMYVNPISIDEKNANI
KRYKFSITGVLNKDTSYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTRLISERQLVDILKEIKENNKM
KN

Sequences:

>Translated_242_residues
MDNINFINRIKNMVGEKGINIKELNDETINILFENGFLNNAYDIFLLKKEELYKIDGFTKEYVDELIKSINKTKNCNFEK
FIYACSIPKVTEKEAIVIAHTFLNFTDLVIDINNNDCDRLKRIDGMSEEIVESIKRNKVLLVNLFMYVNPISIDEKNANI
KRYKFSITGVLNKDTSYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTRLISERQLVDILKEIKENNKM
KN
>Mature_242_residues
MDNINFINRIKNMVGEKGINIKELNDETINILFENGFLNNAYDIFLLKKEELYKIDGFTKEYVDELIKSINKTKNCNFEK
FIYACSIPKVTEKEAIVIAHTFLNFTDLVIDINNNDCDRLKRIDGMSEEIVESIKRNKVLLVNLFMYVNPISIDEKNANI
KRYKFSITGVLNKDTSYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTRLISERQLVDILKEIKENNKM
KN

Specific function: DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of dam

COG id: COG0272

COG function: function code L; NAD-dependent DNA ligase (contains BRCT domain type II)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BRCT domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001357
- InterPro:   IPR018239
- InterPro:   IPR004150
- InterPro:   IPR001679
- InterPro:   IPR013839
- InterPro:   IPR013840
- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR010994
- InterPro:   IPR004149 [H]

Pfam domain/function: PF00533 BRCT; PF01653 DNA_ligase_aden; PF03120 DNA_ligase_OB; PF03119 DNA_ligase_ZBD [H]

EC number: =6.5.1.2 [H]

Molecular weight: Translated: 28232; Mature: 28232

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNINFINRIKNMVGEKGINIKELNDETINILFENGFLNNAYDIFLLKKEELYKIDGFTK
CCCHHHHHHHHHHHHHCCCCEEECCCCEEEEEEECCCCCCCEEEEEECHHHHEEECCCCH
EYVDELIKSINKTKNCNFEKFIYACSIPKVTEKEAIVIAHTFLNFTDLVIDINNNDCDRL
HHHHHHHHHHHCCCCCCHHHEEEEECCCCCCCCCEEEEEEEHHCEEEEEEECCCCCHHHH
KRIDGMSEEIVESIKRNKVLLVNLFMYVNPISIDEKNANIKRYKFSITGVLNKDTSYYEE
HHHCCCHHHHHHHHHCCCEEEEEEEHHCCCCCCCCCCCCEEEEEEEEEEEECCCHHHHHH
MIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTRLISERQLVDILKEIKENNKM
HHHCCCEEEEECCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KN
CC
>Mature Secondary Structure
MDNINFINRIKNMVGEKGINIKELNDETINILFENGFLNNAYDIFLLKKEELYKIDGFTK
CCCHHHHHHHHHHHHHCCCCEEECCCCEEEEEEECCCCCCCEEEEEECHHHHEEECCCCH
EYVDELIKSINKTKNCNFEKFIYACSIPKVTEKEAIVIAHTFLNFTDLVIDINNNDCDRL
HHHHHHHHHHHCCCCCCHHHEEEEECCCCCCCCCEEEEEEEHHCEEEEEEECCCCCHHHH
KRIDGMSEEIVESIKRNKVLLVNLFMYVNPISIDEKNANIKRYKFSITGVLNKDTSYYEE
HHHCCCHHHHHHHHHCCCEEEEEEEHHCCCCCCCCCCCCEEEEEEEEEEEECCCHHHHHH
MIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTRLISERQLVDILKEIKENNKM
HHHCCCEEEEECCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KN
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14500908 [H]