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The map label for this gene is amyB

Identifier: 170755489

GI number: 170755489

Start: 1335540

End: 1337168

Strand: Direct

Name: amyB

Synonym: CLD_3365

Alternate gene names: NA

Gene position: 1335540-1337168 (Clockwise)

Preceding gene: 170754294

Following gene: 170756305

Centisome position: 33.74

GC content: 31.18

Gene sequence:

>1629_bases
ATGTATTATGGTAATAAAAGTTTAAAAAAATATGGAAATTTTATTTTATCTTTAGTATTAGCTTTTACTTTGAGCCTGTG
TTTTACATTTAAAACTTTTGCAGCAAATATGAGTCCTGATTATAAATGTTGTGTAATGGGCCCATTAGAGAAAGTGGATA
ATTGGAGTGATTTTAAGAAGCAATTAATAACTCTTAAAAATAATGGGGTTTACGCTATTACTACAGATGTGTGGTGGGGA
TATGTCGAAAGTGAAGGTGATAATAAGTTTGACTGGAGTTACTACAAAACTTATGGGGATATTGTTCGTGCTGCAGGATT
AAAGTGGATACCTATTATATCAACTCATGAATGTGGTAGTAATGTAGGTGATTCTGTAAATATACCTTTGCCTTCATGGT
TATGGGAAAAAGATACTGCTGATAACATGAAATTTAAGGATGAAAATGGAGTTTATAACAAGGAGACTCTTAGTCCATGG
TGGGCTGATACAGCTAAACAGTATGATGAGCTTTATGAATCCTTTGCCTCAAATTTTAGTTCATATAAAGATATTATAGC
AAAAATATATCTTTCATCTGGACCAGCAGGTGAATTAAGATTTCCATCTTATAATCCATCAACAGGTTGGTCTCGTGGAT
TTTTACAATGTTATACTAAAGCAGCTAAATTGGATTTCCAAAATGCTATGAAAAATAAATATGATACTATATCTAGACTT
AATAGTGAATGGGGAACAAGCTTAAAGAGCTTTGAACAAGTCAGTCCTCCAACTGATGGAGACAATTTTTTTGTGAATGG
ATATAAAACAACCTATGGAAATGATTTTTTAACTTGGTATCAAGATGTGCTTATAAAACATTTATCAAATATAGCAACTA
AAGCACATAACCGTTTTGATCCAGTTTTTGGTGTTGCAATAGGGGCAAAAATATCAGGTGTACACTGGTTAATGAACAGT
CCCAATATGCCACATGCCGCAGAGTATTGTACAGGCTATTATAATTATAGTACTTTGCTTGATCGGTTTAAGAAATCAAA
TTTAGATTTAACATTTACATGTCTTGAAAAGGAGGATTCAAATCCATATAATTATCCTTATTCAGCACCAAAAAGTCTTG
TTATAAATATTGCAAACTTGGCTAGAGAAAAAGGTATAAAATATTTTGGAGAGAACGCATCAGATATTTATAATAATAAA
AAAGCATATGAAAATTGTGCTGAAATGTTATTTAATTATGATTTTTCAGGGTTTACACTTTTAAGACTTAAAAATATAGT
TAATTATGATGGAACACCTACCGCTGAAATGGCTCATTTTGCGGATATTTTAGCCATTAAGCCAGTTCCTGTAACATTTA
CAGTAAATAATGTTAATTTAGAAAGTGACGAGAATTTATATTTAACTGGAAGTAGATGGGAGATGGCTAATTGGAGTACA
GAATTTTATCCCTTACAATTTAAAAATAATAATGGAAGCTATACAATTACCACACATCTTGCTGAAGGCCATAATTACGA
ATTTAAAGCGATAAAGAAAAATAATAATGGAAATGTAATATGGCAAGGTGGTTACAATCAGTTTTATAATGTTCCAAAAG
GTGGAGATTCTTATACTTGGAGTTGGTAA

Upstream 100 bases:

>100_bases
AAAATACAATTATATAATTTTAAGCTCTTAAAATATAATGAACTTTCTTCTAACAAATAATGCTTAAACCATTTATATAA
AATTTAAAGGGGGAATTTTC

Downstream 100 bases:

>100_bases
AATATAAATGTATTATTTATTAAAAATTTGTACAAAATAGATAAAACAATTTAATTATTGTAAAATAATTTCAATTCTAG
TGTTGACAGTAAATTTAAAT

Product: beta-amylase

Products: NA

Alternate protein names: 1,4-alpha-D-glucan maltohydrolase [H]

Number of amino acids: Translated: 542; Mature: 542

Protein sequence:

>542_residues
MYYGNKSLKKYGNFILSLVLAFTLSLCFTFKTFAANMSPDYKCCVMGPLEKVDNWSDFKKQLITLKNNGVYAITTDVWWG
YVESEGDNKFDWSYYKTYGDIVRAAGLKWIPIISTHECGSNVGDSVNIPLPSWLWEKDTADNMKFKDENGVYNKETLSPW
WADTAKQYDELYESFASNFSSYKDIIAKIYLSSGPAGELRFPSYNPSTGWSRGFLQCYTKAAKLDFQNAMKNKYDTISRL
NSEWGTSLKSFEQVSPPTDGDNFFVNGYKTTYGNDFLTWYQDVLIKHLSNIATKAHNRFDPVFGVAIGAKISGVHWLMNS
PNMPHAAEYCTGYYNYSTLLDRFKKSNLDLTFTCLEKEDSNPYNYPYSAPKSLVINIANLAREKGIKYFGENASDIYNNK
KAYENCAEMLFNYDFSGFTLLRLKNIVNYDGTPTAEMAHFADILAIKPVPVTFTVNNVNLESDENLYLTGSRWEMANWST
EFYPLQFKNNNGSYTITTHLAEGHNYEFKAIKKNNNGNVIWQGGYNQFYNVPKGGDSYTWSW

Sequences:

>Translated_542_residues
MYYGNKSLKKYGNFILSLVLAFTLSLCFTFKTFAANMSPDYKCCVMGPLEKVDNWSDFKKQLITLKNNGVYAITTDVWWG
YVESEGDNKFDWSYYKTYGDIVRAAGLKWIPIISTHECGSNVGDSVNIPLPSWLWEKDTADNMKFKDENGVYNKETLSPW
WADTAKQYDELYESFASNFSSYKDIIAKIYLSSGPAGELRFPSYNPSTGWSRGFLQCYTKAAKLDFQNAMKNKYDTISRL
NSEWGTSLKSFEQVSPPTDGDNFFVNGYKTTYGNDFLTWYQDVLIKHLSNIATKAHNRFDPVFGVAIGAKISGVHWLMNS
PNMPHAAEYCTGYYNYSTLLDRFKKSNLDLTFTCLEKEDSNPYNYPYSAPKSLVINIANLAREKGIKYFGENASDIYNNK
KAYENCAEMLFNYDFSGFTLLRLKNIVNYDGTPTAEMAHFADILAIKPVPVTFTVNNVNLESDENLYLTGSRWEMANWST
EFYPLQFKNNNGSYTITTHLAEGHNYEFKAIKKNNNGNVIWQGGYNQFYNVPKGGDSYTWSW
>Mature_542_residues
MYYGNKSLKKYGNFILSLVLAFTLSLCFTFKTFAANMSPDYKCCVMGPLEKVDNWSDFKKQLITLKNNGVYAITTDVWWG
YVESEGDNKFDWSYYKTYGDIVRAAGLKWIPIISTHECGSNVGDSVNIPLPSWLWEKDTADNMKFKDENGVYNKETLSPW
WADTAKQYDELYESFASNFSSYKDIIAKIYLSSGPAGELRFPSYNPSTGWSRGFLQCYTKAAKLDFQNAMKNKYDTISRL
NSEWGTSLKSFEQVSPPTDGDNFFVNGYKTTYGNDFLTWYQDVLIKHLSNIATKAHNRFDPVFGVAIGAKISGVHWLMNS
PNMPHAAEYCTGYYNYSTLLDRFKKSNLDLTFTCLEKEDSNPYNYPYSAPKSLVINIANLAREKGIKYFGENASDIYNNK
KAYENCAEMLFNYDFSGFTLLRLKNIVNYDGTPTAEMAHFADILAIKPVPVTFTVNNVNLESDENLYLTGSRWEMANWST
EFYPLQFKNNNGSYTITTHLAEGHNYEFKAIKKNNNGNVIWQGGYNQFYNVPKGGDSYTWSW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM20 (carbohydrate binding type-20) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001554
- InterPro:   IPR018238
- InterPro:   IPR000125
- InterPro:   IPR002044
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783 [H]

Pfam domain/function: PF00686 CBM_20; PF01373 Glyco_hydro_14 [H]

EC number: =3.2.1.2 [H]

Molecular weight: Translated: 62051; Mature: 62051

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS51166 CBM20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYYGNKSLKKYGNFILSLVLAFTLSLCFTFKTFAANMSPDYKCCVMGPLEKVDNWSDFKK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCHHHHHH
QLITLKNNGVYAITTDVWWGYVESEGDNKFDWSYYKTYGDIVRAAGLKWIPIISTHECGS
HEEEEECCCEEEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCC
NVGDSVNIPLPSWLWEKDTADNMKFKDENGVYNKETLSPWWADTAKQYDELYESFASNFS
CCCCEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SYKDIIAKIYLSSGPAGELRFPSYNPSTGWSRGFLQCYTKAAKLDFQNAMKNKYDTISRL
HHHHHHHHHHCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSEWGTSLKSFEQVSPPTDGDNFFVNGYKTTYGNDFLTWYQDVLIKHLSNIATKAHNRFD
HHHHCCHHHHHHHCCCCCCCCCEEEECEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
PVFGVAIGAKISGVHWLMNSPNMPHAAEYCTGYYNYSTLLDRFKKSNLDLTFTCLEKEDS
CHHEEEECCEECCEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCC
NPYNYPYSAPKSLVINIANLAREKGIKYFGENASDIYNNKKAYENCAEMLFNYDFSGFTL
CCCCCCCCCCHHHHHHHHHHHHHCCCHHCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEH
LRLKNIVNYDGTPTAEMAHFADILAIKPVPVTFTVNNVNLESDENLYLTGSRWEMANWST
EEHHHHHCCCCCCHHHHHHHHHHHEECCCEEEEEEECEEECCCCCEEEECCCEEECCCCC
EFYPLQFKNNNGSYTITTHLAEGHNYEFKAIKKNNNGNVIWQGGYNQFYNVPKGGDSYTW
EEEEEEEECCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEECCCHHHCCCCCCCCCCCC
SW
CC
>Mature Secondary Structure
MYYGNKSLKKYGNFILSLVLAFTLSLCFTFKTFAANMSPDYKCCVMGPLEKVDNWSDFKK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCHHHHHH
QLITLKNNGVYAITTDVWWGYVESEGDNKFDWSYYKTYGDIVRAAGLKWIPIISTHECGS
HEEEEECCCEEEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCC
NVGDSVNIPLPSWLWEKDTADNMKFKDENGVYNKETLSPWWADTAKQYDELYESFASNFS
CCCCEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SYKDIIAKIYLSSGPAGELRFPSYNPSTGWSRGFLQCYTKAAKLDFQNAMKNKYDTISRL
HHHHHHHHHHCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSEWGTSLKSFEQVSPPTDGDNFFVNGYKTTYGNDFLTWYQDVLIKHLSNIATKAHNRFD
HHHHCCHHHHHHHCCCCCCCCCEEEECEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
PVFGVAIGAKISGVHWLMNSPNMPHAAEYCTGYYNYSTLLDRFKKSNLDLTFTCLEKEDS
CHHEEEECCEECCEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCC
NPYNYPYSAPKSLVINIANLAREKGIKYFGENASDIYNNKKAYENCAEMLFNYDFSGFTL
CCCCCCCCCCHHHHHHHHHHHHHCCCHHCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEH
LRLKNIVNYDGTPTAEMAHFADILAIKPVPVTFTVNNVNLESDENLYLTGSRWEMANWST
EEHHHHHCCCCCCHHHHHHHHHHHEECCCEEEEEEECEEECCCCCEEEECCCEEECCCCC
EFYPLQFKNNNGSYTITTHLAEGHNYEFKAIKKNNNGNVIWQGGYNQFYNVPKGGDSYTW
EEEEEEEECCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEECCCHHHCCCCCCCCCCCC
SW
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2461360 [H]