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The map label for this gene is yfmC [H]

Identifier: 170755421

GI number: 170755421

Start: 805192

End: 806181

Strand: Direct

Name: yfmC [H]

Synonym: CLD_0080

Alternate gene names: 170755421

Gene position: 805192-806181 (Clockwise)

Preceding gene: 170754624

Following gene: 170756160

Centisome position: 20.34

GC content: 31.82

Gene sequence:

>990_bases
GTGAAAAAGTTTATGGGATTATTTGTCTCACTTATATTAATCATAGGTGTACTATCTGGTTGTAGTGGAAGTAATAATAA
AGATTCCCAAAGCAAATCAGATAATACATCAGCAGAACAAACAAAAGATAATGAAAACTCTCAGTGGCCAAGAACCATAA
AAGATGCAACAGGAAAAGAGATTAAATTTGATAAAAAACCTGAGAGGGTAGTAATTCTTCATGCAGCATTTTTAGATTAT
TTTTTTGCTTTAGAAACACCACCAGCTGCTTCTGCTGGAGCAACAGTTGGTAATGCAATGAAGGCTTTGGATGAATTTGA
AACCCTTAAGCCATATAAGGGTACTGCAAATGTTATGGATTTAGGTAGTGCTAGAGATTTAAATTTAGAAGCAGTTTTAA
AATCAAAGCCAGATGTAATTGTAACATTTAAAGGTCATGCAGATAAGATTTATGATAAGTTAGCTAAGATAGCTCCTGTA
GTTCAGATAGACTTTAAGGATTCTTGGCAAAATAAAACTATGCAATGTGCAAAAATCGTTGGCAAAGAGGACTTAGCTAA
TAAAATTATAAATGAAACTGAGAAGGAAATTAAAAATACTAAAAAGCTTTTAGAAAATCATAAGGACAAAACAGTTGCTT
TACTTAGAGTTGATGGGAAAGGAAATTTTGTTACCCTTGGTTCAAAGGATACTCTTTATTACAACAAAGAAGATGGTTTT
AACTTGTCAATACCAAAGGGATACCCTGAAGATAGCAAGGTTATTTCATTAGAAGGTTTATCAAAGATTAATCCAGATTA
TATTATATTTAGGCATTTCCCTGAAATTGTTAATTCAGCCGTTGAAAAACAAAAAACTTCTCCTGTATGGCAGTCACTTA
ACGCAGTAAAGAATGATCATATTTTATTCTTTGATGATTCTCTAAATAGCGAAAGTCCACTTGCATTACAGATTTCAGCT
AAAAACTTAACAAAAGCCATATCAAAATAA

Upstream 100 bases:

>100_bases
TTAATTTGATATATTAGTCATAGTTAAATTAGTCATGACTAACTCAGTTGATATGATGGCCATTATATATTATTCAAATT
ACTATATAGGGGGAATGAAA

Downstream 100 bases:

>100_bases
ACTTTCATTGGCAATTTAAATGTAATCTAAATGGAAGTTATCCATTGGTTTGGCATAATAAGAATAGTTTACAGTAATAA
GGAGGTAGCAGTTATATGAA

Product: putative ferrichrome ABC transporter, ferrichrome-binding protein

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: Ferric-citrate-binding protein [H]

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MKKFMGLFVSLILIIGVLSGCSGSNNKDSQSKSDNTSAEQTKDNENSQWPRTIKDATGKEIKFDKKPERVVILHAAFLDY
FFALETPPAASAGATVGNAMKALDEFETLKPYKGTANVMDLGSARDLNLEAVLKSKPDVIVTFKGHADKIYDKLAKIAPV
VQIDFKDSWQNKTMQCAKIVGKEDLANKIINETEKEIKNTKKLLENHKDKTVALLRVDGKGNFVTLGSKDTLYYNKEDGF
NLSIPKGYPEDSKVISLEGLSKINPDYIIFRHFPEIVNSAVEKQKTSPVWQSLNAVKNDHILFFDDSLNSESPLALQISA
KNLTKAISK

Sequences:

>Translated_329_residues
MKKFMGLFVSLILIIGVLSGCSGSNNKDSQSKSDNTSAEQTKDNENSQWPRTIKDATGKEIKFDKKPERVVILHAAFLDY
FFALETPPAASAGATVGNAMKALDEFETLKPYKGTANVMDLGSARDLNLEAVLKSKPDVIVTFKGHADKIYDKLAKIAPV
VQIDFKDSWQNKTMQCAKIVGKEDLANKIINETEKEIKNTKKLLENHKDKTVALLRVDGKGNFVTLGSKDTLYYNKEDGF
NLSIPKGYPEDSKVISLEGLSKINPDYIIFRHFPEIVNSAVEKQKTSPVWQSLNAVKNDHILFFDDSLNSESPLALQISA
KNLTKAISK
>Mature_329_residues
MKKFMGLFVSLILIIGVLSGCSGSNNKDSQSKSDNTSAEQTKDNENSQWPRTIKDATGKEIKFDKKPERVVILHAAFLDY
FFALETPPAASAGATVGNAMKALDEFETLKPYKGTANVMDLGSARDLNLEAVLKSKPDVIVTFKGHADKIYDKLAKIAPV
VQIDFKDSWQNKTMQCAKIVGKEDLANKIINETEKEIKNTKKLLENHKDKTVALLRVDGKGNFVTLGSKDTLYYNKEDGF
NLSIPKGYPEDSKVISLEGLSKINPDYIIFRHFPEIVNSAVEKQKTSPVWQSLNAVKNDHILFFDDSLNSESPLALQISA
KNLTKAISK

Specific function: Part of the ABC transporter complex yfmCDEF involved in citrate-dependent Fe(3+) import. Binds citrate-dependent Fe(3+) and delivers it to the surface of yfmDE (Probable) [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082411, Length=267, Percent_Identity=24.7191011235955, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 36490; Mature: 36490

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFMGLFVSLILIIGVLSGCSGSNNKDSQSKSDNTSAEQTKDNENSQWPRTIKDATGKE
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHCCCCC
IKFDKKPERVVILHAAFLDYFFALETPPAASAGATVGNAMKALDEFETLKPYKGTANVMD
EEECCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEE
LGSARDLNLEAVLKSKPDVIVTFKGHADKIYDKLAKIAPVVQIDFKDSWQNKTMQCAKIV
CCCCCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHH
GKEDLANKIINETEKEIKNTKKLLENHKDKTVALLRVDGKGNFVTLGSKDTLYYNKEDGF
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEECCCCEEEEECCCCE
NLSIPKGYPEDSKVISLEGLSKINPDYIIFRHFPEIVNSAVEKQKTSPVWQSLNAVKNDH
EEECCCCCCCCCCEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
ILFFDDSLNSESPLALQISAKNLTKAISK
EEEEECCCCCCCCEEEEEEHHHHHHHHCC
>Mature Secondary Structure
MKKFMGLFVSLILIIGVLSGCSGSNNKDSQSKSDNTSAEQTKDNENSQWPRTIKDATGKE
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHCCCCC
IKFDKKPERVVILHAAFLDYFFALETPPAASAGATVGNAMKALDEFETLKPYKGTANVMD
EEECCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEE
LGSARDLNLEAVLKSKPDVIVTFKGHADKIYDKLAKIAPVVQIDFKDSWQNKTMQCAKIV
CCCCCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHH
GKEDLANKIINETEKEIKNTKKLLENHKDKTVALLRVDGKGNFVTLGSKDTLYYNKEDGF
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEECCCCEEEEECCCCE
NLSIPKGYPEDSKVISLEGLSKINPDYIIFRHFPEIVNSAVEKQKTSPVWQSLNAVKNDH
EEECCCCCCCCCCEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
ILFFDDSLNSESPLALQISAKNLTKAISK
EEEEECCCCCCCCEEEEEEHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]