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The map label for this gene is ydfF [H]

Identifier: 170755413

GI number: 170755413

Start: 1007744

End: 1008454

Strand: Direct

Name: ydfF [H]

Synonym: CLD_3670

Alternate gene names: 170755413

Gene position: 1007744-1008454 (Clockwise)

Preceding gene: 170756846

Following gene: 170756404

Centisome position: 25.46

GC content: 32.21

Gene sequence:

>711_bases
ATGACTGGAACTCCACAAATATCACAATTAGCAGAAATTTTAGCTGATAAATCACGCGCTACCATTCTTATGGTGATGAT
GGATGGTGAATTTCACACTGTTAATGAGTTAGCTAGAGCTGCTGGAATTAAATCTCATACTGCTTCTTATCATTTAACAA
AGCTTACTGAATTGCAATGGATAGTTATGGAAAAACATGGACGATTTCATTATTATCAAATAAGTAATAAAGAGTTGGCT
CAAATGCTTGAGAGTTGGCTTCAAATTTCTCCTTTAAAACCTTCAAGGTCATTAAATCAAAGTATTGAAAATCAGATGCT
ATATTTTGGTAGGGTTTGCTATGATCATTTAGCTGGAAAAATAGGAGTACAAATTACTGATTGGTTACTTGAAAAGAATT
ATATTGTAAAATCAGAAGCTGGCTGGAGCTTAAGTATAGAAGGAGAAAATTTTTTTGAGTCCAATGGAGTAAACATTGAG
TTATTAAAGAAAGAAAAAAGATGTTACTGCCGAATGTGTTTAGATTGGAGTGAGAGAAAACATCACGTAGCTGGTAGTGT
AGGAAAAGCTCTAATGGATATATTTTTTAATAATCAATGGATAGAGCGTACAGGAGATAGTAGAGCTATTAAGTTAACAA
CTAAGGGTAAAGAACAACTATCTAAAAAGTGGGATATAGATTTTGAGTCTGAAAATAAATTATTAGAATAG

Upstream 100 bases:

>100_bases
TATGATTCATAAACTCACCCCTTGTACAATTTGTATAAGTTATTATATACTATAGATACATCAATGCTCATCGATATATG
AAATTATTAGGAGGATATAT

Downstream 100 bases:

>100_bases
TATTCTATTGCTTTTCTATAAGTCTTTATGTGTTCAACAGAAGTAGAGTTACAATGTAGATTTAAAATAGTATATCTCAT
TTTTCAGTTTGCTTTACAAA

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MTGTPQISQLAEILADKSRATILMVMMDGEFHTVNELARAAGIKSHTASYHLTKLTELQWIVMEKHGRFHYYQISNKELA
QMLESWLQISPLKPSRSLNQSIENQMLYFGRVCYDHLAGKIGVQITDWLLEKNYIVKSEAGWSLSIEGENFFESNGVNIE
LLKKEKRCYCRMCLDWSERKHHVAGSVGKALMDIFFNNQWIERTGDSRAIKLTTKGKEQLSKKWDIDFESENKLLE

Sequences:

>Translated_236_residues
MTGTPQISQLAEILADKSRATILMVMMDGEFHTVNELARAAGIKSHTASYHLTKLTELQWIVMEKHGRFHYYQISNKELA
QMLESWLQISPLKPSRSLNQSIENQMLYFGRVCYDHLAGKIGVQITDWLLEKNYIVKSEAGWSLSIEGENFFESNGVNIE
LLKKEKRCYCRMCLDWSERKHHVAGSVGKALMDIFFNNQWIERTGDSRAIKLTTKGKEQLSKKWDIDFESENKLLE
>Mature_235_residues
TGTPQISQLAEILADKSRATILMVMMDGEFHTVNELARAAGIKSHTASYHLTKLTELQWIVMEKHGRFHYYQISNKELAQ
MLESWLQISPLKPSRSLNQSIENQMLYFGRVCYDHLAGKIGVQITDWLLEKNYIVKSEAGWSLSIEGENFFESNGVNIEL
LKKEKRCYCRMCLDWSERKHHVAGSVGKALMDIFFNNQWIERTGDSRAIKLTTKGKEQLSKKWDIDFESENKLLE

Specific function: Unknown

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 27295; Mature: 27164

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGTPQISQLAEILADKSRATILMVMMDGEFHTVNELARAAGIKSHTASYHLTKLTELQW
CCCCCCHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEHHHHEEE
IVMEKHGRFHYYQISNKELAQMLESWLQISPLKPSRSLNQSIENQMLYFGRVCYDHLAGK
EEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
IGVQITDWLLEKNYIVKSEAGWSLSIEGENFFESNGVNIELLKKEKRCYCRMCLDWSERK
CCCEEEEEHHCCCEEEECCCCCEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHCCHHHHH
HHVAGSVGKALMDIFFNNQWIERTGDSRAIKLTTKGKEQLSKKWDIDFESENKLLE
HHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TGTPQISQLAEILADKSRATILMVMMDGEFHTVNELARAAGIKSHTASYHLTKLTELQW
CCCCCHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEHHHHEEE
IVMEKHGRFHYYQISNKELAQMLESWLQISPLKPSRSLNQSIENQMLYFGRVCYDHLAGK
EEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
IGVQITDWLLEKNYIVKSEAGWSLSIEGENFFESNGVNIELLKKEKRCYCRMCLDWSERK
CCCEEEEEHHCCCEEEECCCCCEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHCCHHHHH
HHVAGSVGKALMDIFFNNQWIERTGDSRAIKLTTKGKEQLSKKWDIDFESENKLLE
HHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]