| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170755376
Identifier: 170755376
GI number: 170755376
Start: 2762600
End: 2763457
Strand: Reverse
Name: 170755376
Synonym: CLD_1979
Alternate gene names: NA
Gene position: 2763457-2762600 (Counterclockwise)
Preceding gene: 170755763
Following gene: 170755312
Centisome position: 69.82
GC content: 28.21
Gene sequence:
>858_bases GTGAGTATAGTTCGATTATTTACATTACCAGGGGCGGGTTCTTCAGCAATAATGTATTACAAATGGATACCCATCATTGG AAAGCAAATCAGACTAAGTCCATTAGAGATACCAGGCCGAGGAATTAAAGAGAGAGAAAAAAAAGCAGTAAGTCGTAGAA ATCTTATAGATTTGTTATTTGAAGATGTTAAATTAAAGTTAAAGAATGATGAAGAGTATATGATATTAGGAAATAGTGCA AGTTCAATTATAGCAATAGACCTATGTAGACTAATAGAGACGTATGAATTTAAAAGACCTAAGCACATTTTTATTGCTGT GGAACCGCCACCGGGTATTTTGAAAAATAGAAAAAAAATGTTGGAAGATCCTAAGAGAAGGAATTTTGTGAAAAGTGTTT TTGAAAAATATTTTCTTGATGATTTAATTACAAAAGAGGAATTAAATGAATTATTATCTGTATTTTTAAATATTGTTTAT AACAACAGAGAAAAAATTTTAGATTTTTCTGCAGAAGATATGTATAAGGAGATATATGGAGATATAAAGATGATAAAAGG GAAGAAATATAAAGCATTAGAATTTGCACTTGAACATATAAAGCTTTTTATTGAGGATGAAAAAATAACTTTAGAAGATG AAATAAGTCTATTGCCTATCAATGTTGATTTAACTGTTTTCGGAGCTACTAATGATGAAGTAGCTAGTGAATTAGAATTA ATGAAATGGAAGGAATATACATGTGCAAAGTTTGAGTTATATATGGTAGAAGGAGATCATTTGATTCTATTTAATAATAA TGAAACTGTATTACAAAAGATACAGGAAAAAGCAGAAACTATATTAAAAAAAATTTGA
Upstream 100 bases:
>100_bases ATATCTAAAATTTATGAAGAATTCAGTATAAAAAAACTCCTAAATTTAATACTAATATGATTATATCCAAGTTATTCTAT TTTCAAGGAGGTGTGATGGT
Downstream 100 bases:
>100_bases GGTGAATTATGAGATCAAGGATTAAGGGAGTAGGAAGATACTTACCAAATAGAATTGTAACTAGCGAGGAAGCAGAAGAA CTTGCAGGTTTTAAAAAATT
Product: putative bacT protein
Products: NA
Alternate protein names: BacT Protein; Oleoyl-(Acyl-Carrier-Protein) Hydrolase; Linear Gramicidin Dehydrogenase LgrE
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MSIVRLFTLPGAGSSAIMYYKWIPIIGKQIRLSPLEIPGRGIKEREKKAVSRRNLIDLLFEDVKLKLKNDEEYMILGNSA SSIIAIDLCRLIETYEFKRPKHIFIAVEPPPGILKNRKKMLEDPKRRNFVKSVFEKYFLDDLITKEELNELLSVFLNIVY NNREKILDFSAEDMYKEIYGDIKMIKGKKYKALEFALEHIKLFIEDEKITLEDEISLLPINVDLTVFGATNDEVASELEL MKWKEYTCAKFELYMVEGDHLILFNNNETVLQKIQEKAETILKKI
Sequences:
>Translated_285_residues MSIVRLFTLPGAGSSAIMYYKWIPIIGKQIRLSPLEIPGRGIKEREKKAVSRRNLIDLLFEDVKLKLKNDEEYMILGNSA SSIIAIDLCRLIETYEFKRPKHIFIAVEPPPGILKNRKKMLEDPKRRNFVKSVFEKYFLDDLITKEELNELLSVFLNIVY NNREKILDFSAEDMYKEIYGDIKMIKGKKYKALEFALEHIKLFIEDEKITLEDEISLLPINVDLTVFGATNDEVASELEL MKWKEYTCAKFELYMVEGDHLILFNNNETVLQKIQEKAETILKKI >Mature_284_residues SIVRLFTLPGAGSSAIMYYKWIPIIGKQIRLSPLEIPGRGIKEREKKAVSRRNLIDLLFEDVKLKLKNDEEYMILGNSAS SIIAIDLCRLIETYEFKRPKHIFIAVEPPPGILKNRKKMLEDPKRRNFVKSVFEKYFLDDLITKEELNELLSVFLNIVYN NREKILDFSAEDMYKEIYGDIKMIKGKKYKALEFALEHIKLFIEDEKITLEDEISLLPINVDLTVFGATNDEVASELELM KWKEYTCAKFELYMVEGDHLILFNNNETVLQKIQEKAETILKKI
Specific function: Unknown
COG id: COG3208
COG function: function code Q; Predicted thioesterase involved in non-ribosomal peptide biosynthesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33293; Mature: 33161
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIVRLFTLPGAGSSAIMYYKWIPIIGKQIRLSPLEIPGRGIKEREKKAVSRRNLIDLLF CCEEEEEEECCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH EDVKLKLKNDEEYMILGNSASSIIAIDLCRLIETYEFKRPKHIFIAVEPPPGILKNRKKM HHHEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH LEDPKRRNFVKSVFEKYFLDDLITKEELNELLSVFLNIVYNNREKILDFSAEDMYKEIYG HCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHC DIKMIKGKKYKALEFALEHIKLFIEDEKITLEDEISLLPINVDLTVFGATNDEVASELEL CEEEECCCCHHHHHHHHHHHHEEEECCEEEEECCCEEEEEEEEEEEEECCCHHHHHHHHH MKWKEYTCAKFELYMVEGDHLILFNNNETVLQKIQEKAETILKKI HHHCCCCEEEEEEEEEECCEEEEECCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SIVRLFTLPGAGSSAIMYYKWIPIIGKQIRLSPLEIPGRGIKEREKKAVSRRNLIDLLF CEEEEEEECCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH EDVKLKLKNDEEYMILGNSASSIIAIDLCRLIETYEFKRPKHIFIAVEPPPGILKNRKKM HHHEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH LEDPKRRNFVKSVFEKYFLDDLITKEELNELLSVFLNIVYNNREKILDFSAEDMYKEIYG HCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHC DIKMIKGKKYKALEFALEHIKLFIEDEKITLEDEISLLPINVDLTVFGATNDEVASELEL CEEEECCCCHHHHHHHHHHHHEEEECCEEEEECCCEEEEEEEEEEEEECCCHHHHHHHHH MKWKEYTCAKFELYMVEGDHLILFNNNETVLQKIQEKAETILKKI HHHCCCCEEEEEEEEEECCEEEEECCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA