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The map label for this gene is nlpD [H]

Identifier: 170755374

GI number: 170755374

Start: 3920359

End: 3921294

Strand: Reverse

Name: nlpD [H]

Synonym: CLD_0879

Alternate gene names: 170755374

Gene position: 3921294-3920359 (Counterclockwise)

Preceding gene: 170754895

Following gene: 170754302

Centisome position: 99.07

GC content: 25.43

Gene sequence:

>936_bases
TTGAGTAAGGATATAGGGAAAAGACTTATTTTACTGTTATCTATAGGGGTTACCATTCTAGTAATTACATACGCTTATAT
TTATACTAAACCTAATGCTTATGAGGTACTAGTAAATAATAATCCTGTAGCATATGTGAAAAATAAAGAAGATTTTAATA
AAATATATAAAGAAGTAGAAAATAATATAAAGAAAAGATTTAATTTAGATATGAGAAATAATATAGATTTCCAAAATATA
AAGGTAAAGGGAGATATACTTACAAGTAATGATTTTATAAAAAAATCTATATTAGAAAATTCTAATATAAAAGTAACAGC
TTTCAAAGTAAAGTTTCAAGATGAATTTATAGGAATATTATCAAATAAAAAAGAAATTCAAGATTTAAGTGAAATAATAA
ATAAAAAATATTCTGTAAATATAATAAATCATATAAAAATAAAGGAAGAGACTATATCAGTCAAGGAAATAAACACTATA
GATGAGCTTGCAATACATATATCTAAATCACAGAAATTGCAAAATTTTATGAATAGTAAAAGGCTATCAAGAGGAGATAT
AAATGAGGAAATAGCTTTAGCAATGCCCACAAATGGATGCATAACATCTAAATTTGGTAAAAGGTGGGGTAAATTTCATA
AAGGTTTAGATATAGGTGCTCCTAATGGTACTGACATTTATTCCAGTTTAGATGGTAGAGTCATATATTCTGGTTGGGAA
GAAGGATATGGAAAAGTTATAAAAATACAACATAGTTCTGAACTTATAACTATATATGCACATTGTAGCAATTTATATGT
TAAAGTAGGTCAATACGTTAGAAAAGGAGAAAAAATAGGAGAAGTAGGTAGTACAGGAAGAAGTACTGGTCCTCATGTAC
ATTTTGAATTAAGAAAAAATAATGAACCTTGTAATCCATTAATTTATATAAAATGA

Upstream 100 bases:

>100_bases
ACTACAGAATAATTATATAAATAATTAAAAATAGTAATAAAACATATTAATTTGGGAATATTAGAATATATGATATATAA
AAATTAAAAAGGGTGATATT

Downstream 100 bases:

>100_bases
TAATAAAAAATATCACTATCATTGACAGTGATATTTTTTTATTATATACTTTGACTATCAAAATATTTGACTATCAAAAA
AGTGAGGAGAAAAGAAATGG

Product: putative peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MSKDIGKRLILLLSIGVTILVITYAYIYTKPNAYEVLVNNNPVAYVKNKEDFNKIYKEVENNIKKRFNLDMRNNIDFQNI
KVKGDILTSNDFIKKSILENSNIKVTAFKVKFQDEFIGILSNKKEIQDLSEIINKKYSVNIINHIKIKEETISVKEINTI
DELAIHISKSQKLQNFMNSKRLSRGDINEEIALAMPTNGCITSKFGKRWGKFHKGLDIGAPNGTDIYSSLDGRVIYSGWE
EGYGKVIKIQHSSELITIYAHCSNLYVKVGQYVRKGEKIGEVGSTGRSTGPHVHFELRKNNEPCNPLIYIK

Sequences:

>Translated_311_residues
MSKDIGKRLILLLSIGVTILVITYAYIYTKPNAYEVLVNNNPVAYVKNKEDFNKIYKEVENNIKKRFNLDMRNNIDFQNI
KVKGDILTSNDFIKKSILENSNIKVTAFKVKFQDEFIGILSNKKEIQDLSEIINKKYSVNIINHIKIKEETISVKEINTI
DELAIHISKSQKLQNFMNSKRLSRGDINEEIALAMPTNGCITSKFGKRWGKFHKGLDIGAPNGTDIYSSLDGRVIYSGWE
EGYGKVIKIQHSSELITIYAHCSNLYVKVGQYVRKGEKIGEVGSTGRSTGPHVHFELRKNNEPCNPLIYIK
>Mature_310_residues
SKDIGKRLILLLSIGVTILVITYAYIYTKPNAYEVLVNNNPVAYVKNKEDFNKIYKEVENNIKKRFNLDMRNNIDFQNIK
VKGDILTSNDFIKKSILENSNIKVTAFKVKFQDEFIGILSNKKEIQDLSEIINKKYSVNIINHIKIKEETISVKEINTID
ELAIHISKSQKLQNFMNSKRLSRGDINEEIALAMPTNGCITSKFGKRWGKFHKGLDIGAPNGTDIYSSLDGRVIYSGWEE
GYGKVIKIQHSSELITIYAHCSNLYVKVGQYVRKGEKIGEVGSTGRSTGPHVHFELRKNNEPCNPLIYIK

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082297, Length=121, Percent_Identity=33.8842975206612, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI87081989, Length=95, Percent_Identity=40, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1789099, Length=116, Percent_Identity=39.6551724137931, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87082174, Length=116, Percent_Identity=39.6551724137931, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 35453; Mature: 35322

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKDIGKRLILLLSIGVTILVITYAYIYTKPNAYEVLVNNNPVAYVKNKEDFNKIYKEVE
CCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCEEEEECHHHHHHHHHHHH
NNIKKRFNLDMRNNIDFQNIKVKGDILTSNDFIKKSILENSNIKVTAFKVKFQDEFIGIL
HHHHHHCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHCCCCEEEEEEEEEECCHHHHHH
SNKKEIQDLSEIINKKYSVNIINHIKIKEETISVKEINTIDELAIHISKSQKLQNFMNSK
CCHHHHHHHHHHHCCCEEEEEEEEEEEEHHEEEHHHCCCHHHHHHHHHHHHHHHHHHHHC
RLSRGDINEEIALAMPTNGCITSKFGKRWGKFHKGLDIGAPNGTDIYSSLDGRVIYSGWE
CCCCCCCCCCEEEEECCCCCEECHHHHHHHHHHCCCCCCCCCCCHHHHCCCCEEEEECCC
EGYGKVIKIQHSSELITIYAHCSNLYVKVGQYVRKGEKIGEVGSTGRSTGPHVHFELRKN
CCCCCEEEEECCCCEEEEEEEHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCEEEEEEECC
NEPCNPLIYIK
CCCCCCEEEEC
>Mature Secondary Structure 
SKDIGKRLILLLSIGVTILVITYAYIYTKPNAYEVLVNNNPVAYVKNKEDFNKIYKEVE
CCHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCEEEEECHHHHHHHHHHHH
NNIKKRFNLDMRNNIDFQNIKVKGDILTSNDFIKKSILENSNIKVTAFKVKFQDEFIGIL
HHHHHHCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHCCCCEEEEEEEEEECCHHHHHH
SNKKEIQDLSEIINKKYSVNIINHIKIKEETISVKEINTIDELAIHISKSQKLQNFMNSK
CCHHHHHHHHHHHCCCEEEEEEEEEEEEHHEEEHHHCCCHHHHHHHHHHHHHHHHHHHHC
RLSRGDINEEIALAMPTNGCITSKFGKRWGKFHKGLDIGAPNGTDIYSSLDGRVIYSGWE
CCCCCCCCCCEEEEECCCCCEECHHHHHHHHHHCCCCCCCCCCCHHHHCCCCEEEEECCC
EGYGKVIKIQHSSELITIYAHCSNLYVKVGQYVRKGEKIGEVGSTGRSTGPHVHFELRKN
CCCCCEEEEECCCCEEEEEEEHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCEEEEEEECC
NEPCNPLIYIK
CCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]