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The map label for this gene is rnfD [H]

Identifier: 170755336

GI number: 170755336

Start: 457255

End: 458187

Strand: Direct

Name: rnfD [H]

Synonym: CLD_0382

Alternate gene names: 170755336

Gene position: 457255-458187 (Clockwise)

Preceding gene: 170755456

Following gene: 170754230

Centisome position: 11.55

GC content: 34.08

Gene sequence:

>933_bases
ATGTCTGAATCAATGTATACATTATCTTCATCTCCACATATTCGTTCAAAAGATTCTGTTCAATCAATAATGAGAGATGT
TGTAATAGCTTTACTTCCAGCAACTGCGGCAGGAATATATTTCTTTAAATTAAAAGCACTTTTAGTTATATTAACAGCAG
TTATTTCCTGCGTAGCAGCAGAATATATTTGGGAAAAAGCTACAGGAAGAGATATAAGTATAGGAGATTTAAGTGCAGTA
GTAACAGGAATGTTACTTGCATTTAACGTACCACCAACACTTCCATTATGGATGGTAGTTATAGGGAGCTTTTTCTCTAT
AATAGTTGTTAAACAATTCTTTGGAGGAATAGGACAAAATATAGTAAACCCAGCATTAGCAGGAAGAGCATTTTTACTTG
CATCTTGGCCAGTAGCTATGACTACTTGGACTGTTGATGGAGTTACTACAGCTACACCACTTGCTATTTTAAAGGGGGCA
CCAGGAGAATTACCAAACTTAGCATCAGCTTTTGTAGGACACATAGGAGGATGTATTGGTGAAACATCAGCTTTAGCATT
ACTTATAGGATTTGCTTATCTTTTATATAGAAGAATAATAACTTGGCATATACCTGTTGCTTATGTAGGAACTGTATTTG
TACTTACAACAATAATAGGTAGACATGGAGCTATGTCTGGAAATGCAATATATGAAATATTTGTAGGTGGACTAATGTTA
GGTGCTATATTCATGGCAACTGATTATACAACTTCACCAATGACTAAAAAAGGACAGGTTATCTTCGCAATAGGATGTGG
TGTTATAACAACAGTTATACGTATATTTGGAGGATATCCAGAAGGAGTTTCTTACTCAATAATATTAATGAATTTATTTG
TACCTCTAATAGATAAATTTTTAGCTCCAAGAGTATTTGGGGAGGTGAAATAA

Upstream 100 bases:

>100_bases
TGTCCAGCTAAACGTCATTTAATTCAATCCATAAGAACAGCTAAACGTACAGTTATAGCTTCAAAAAGAAAAAAATAAAT
TAAGTAAGGAGTGACTTTGG

Downstream 100 bases:

>100_bases
TGGAAAAGAATGAAACACTAAAATTAGGATTAAAGCTTTTTATAATAACAGCAATAGCTGGTCTTATATTAGGAGGAGCT
TTCGTAATAACTAAAAAACC

Product: electron transport complex, RnfABCDGE type, D subunit

Products: NA

Alternate protein names: Nitrogen fixation protein rnfD [H]

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MSESMYTLSSSPHIRSKDSVQSIMRDVVIALLPATAAGIYFFKLKALLVILTAVISCVAAEYIWEKATGRDISIGDLSAV
VTGMLLAFNVPPTLPLWMVVIGSFFSIIVVKQFFGGIGQNIVNPALAGRAFLLASWPVAMTTWTVDGVTTATPLAILKGA
PGELPNLASAFVGHIGGCIGETSALALLIGFAYLLYRRIITWHIPVAYVGTVFVLTTIIGRHGAMSGNAIYEIFVGGLML
GAIFMATDYTTSPMTKKGQVIFAIGCGVITTVIRIFGGYPEGVSYSIILMNLFVPLIDKFLAPRVFGEVK

Sequences:

>Translated_310_residues
MSESMYTLSSSPHIRSKDSVQSIMRDVVIALLPATAAGIYFFKLKALLVILTAVISCVAAEYIWEKATGRDISIGDLSAV
VTGMLLAFNVPPTLPLWMVVIGSFFSIIVVKQFFGGIGQNIVNPALAGRAFLLASWPVAMTTWTVDGVTTATPLAILKGA
PGELPNLASAFVGHIGGCIGETSALALLIGFAYLLYRRIITWHIPVAYVGTVFVLTTIIGRHGAMSGNAIYEIFVGGLML
GAIFMATDYTTSPMTKKGQVIFAIGCGVITTVIRIFGGYPEGVSYSIILMNLFVPLIDKFLAPRVFGEVK
>Mature_309_residues
SESMYTLSSSPHIRSKDSVQSIMRDVVIALLPATAAGIYFFKLKALLVILTAVISCVAAEYIWEKATGRDISIGDLSAVV
TGMLLAFNVPPTLPLWMVVIGSFFSIIVVKQFFGGIGQNIVNPALAGRAFLLASWPVAMTTWTVDGVTTATPLAILKGAP
GELPNLASAFVGHIGGCIGETSALALLIGFAYLLYRRIITWHIPVAYVGTVFVLTTIIGRHGAMSGNAIYEIFVGGLMLG
AIFMATDYTTSPMTKKGQVIFAIGCGVITTVIRIFGGYPEGVSYSIILMNLFVPLIDKFLAPRVFGEVK

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=351, Percent_Identity=33.9031339031339, Blast_Score=188, Evalue=5e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 33080; Mature: 32949

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESMYTLSSSPHIRSKDSVQSIMRDVVIALLPATAAGIYFFKLKALLVILTAVISCVAA
CCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EYIWEKATGRDISIGDLSAVVTGMLLAFNVPPTLPLWMVVIGSFFSIIVVKQFFGGIGQN
HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNPALAGRAFLLASWPVAMTTWTVDGVTTATPLAILKGAPGELPNLASAFVGHIGGCIG
HHHHHHHCCCHHEECCCHHEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
ETSALALLIGFAYLLYRRIITWHIPVAYVGTVFVLTTIIGRHGAMSGNAIYEIFVGGLML
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
GAIFMATDYTTSPMTKKGQVIFAIGCGVITTVIRIFGGYPEGVSYSIILMNLFVPLIDKF
HHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
LAPRVFGEVK
HHHHHHCCCC
>Mature Secondary Structure 
SESMYTLSSSPHIRSKDSVQSIMRDVVIALLPATAAGIYFFKLKALLVILTAVISCVAA
CCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EYIWEKATGRDISIGDLSAVVTGMLLAFNVPPTLPLWMVVIGSFFSIIVVKQFFGGIGQN
HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNPALAGRAFLLASWPVAMTTWTVDGVTTATPLAILKGAPGELPNLASAFVGHIGGCIG
HHHHHHHCCCHHEECCCHHEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
ETSALALLIGFAYLLYRRIITWHIPVAYVGTVFVLTTIIGRHGAMSGNAIYEIFVGGLML
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
GAIFMATDYTTSPMTKKGQVIFAIGCGVITTVIRIFGGYPEGVSYSIILMNLFVPLIDKF
HHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
LAPRVFGEVK
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA