| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170755277
Identifier: 170755277
GI number: 170755277
Start: 1443929
End: 1444723
Strand: Direct
Name: 170755277
Synonym: CLD_3260
Alternate gene names: NA
Gene position: 1443929-1444723 (Clockwise)
Preceding gene: 170756336
Following gene: 170754742
Centisome position: 36.48
GC content: 21.26
Gene sequence:
>795_bases ATGGCATACGACATAAAATTAAAAAATAAGAATGAAGAAGAATTAGAAAGAATTGCAAATATTATTATGAATTTATTTTT GTATCAAGTAGTATTTTTTATAATATTTATTATGTTAGCAAATATTTTAGGATATGTGGGATTAAATAAAAATATTATAC AACCTTATAGTAAATTAGCAGGGGAAATTTTAGCATATATATTTTTTATTAAGAATTATATTAAAGACAATAGATATAAA TTAAAATTTAAAAATACATTACATTTTAAAGGATATGTTTTTATAGCAATGCTAATTATAGGGTATATTTTGGTCTATGA TAATACAATTGATATAGTTTTATCAAAGGTTGTAAAAAATAGTTGGTTCTATGATGTTATGACTAAAGAAATGAAAAATC CAATAGTAGGATTTATAGGAACAGTGATTATGGCACCTATTTTTGAGGAGATAGTTTATAGAGGAATAATGTTAGATGAG CTATTGGTTAAATACAATTATAAAAAAGCTATAATTATTTCTGCATTAATATTTGCAGTAATTCATCTTAATTTTGTTCA ACTAACAGATGCTTTTATTGCAGGTATTATCCTTGGGACTGTTTATTGTAAAACTAAATGTTTAATTCCATGTATTATAA TTCATTTTTTAAATAACTTATTTTGCAATATAGCTAAATTTTATCCCAGTATATATAAAACTAAATTTAATATTATAAGA TTAGGTATTGGAATAGCGATTTTAGCAACATTAGCATATATTTTTTTAAAAAATAGAAAAAAAGTTATTTTATAG
Upstream 100 bases:
>100_bases GTAAAATATATATAAATAAAGATATATATACATAAATGAAAAATGTATATTTAAAATACTAATAATGTAATATAATGTAG TTAATAAATAGGGGGGTAAA
Downstream 100 bases:
>100_bases CAAAATCATATCTAATGTTTTAAAGAGGATAATCATAATTTCAAGGTTAATTAATTTGTTTCTCCAAGATTAAAACATAT ATTGCTAATTATAAATTAGA
Product: CAAX amino terminal protease family protein
Products: NA
Alternate protein names: Abortive Infection Protein; Membrane-Associated Protease; CAAX Amino Terminal Protease Family; CAAX Amino Protease Family Protein; Caax Amino Protease Family Protein; Metal-Dependent Membrane Protease; Transmembrane CAAX Amino Protease Family Protein; CAAX Amino Protease
Number of amino acids: Translated: 264; Mature: 263
Protein sequence:
>264_residues MAYDIKLKNKNEEELERIANIIMNLFLYQVVFFIIFIMLANILGYVGLNKNIIQPYSKLAGEILAYIFFIKNYIKDNRYK LKFKNTLHFKGYVFIAMLIIGYILVYDNTIDIVLSKVVKNSWFYDVMTKEMKNPIVGFIGTVIMAPIFEEIVYRGIMLDE LLVKYNYKKAIIISALIFAVIHLNFVQLTDAFIAGIILGTVYCKTKCLIPCIIIHFLNNLFCNIAKFYPSIYKTKFNIIR LGIGIAILATLAYIFLKNRKKVIL
Sequences:
>Translated_264_residues MAYDIKLKNKNEEELERIANIIMNLFLYQVVFFIIFIMLANILGYVGLNKNIIQPYSKLAGEILAYIFFIKNYIKDNRYK LKFKNTLHFKGYVFIAMLIIGYILVYDNTIDIVLSKVVKNSWFYDVMTKEMKNPIVGFIGTVIMAPIFEEIVYRGIMLDE LLVKYNYKKAIIISALIFAVIHLNFVQLTDAFIAGIILGTVYCKTKCLIPCIIIHFLNNLFCNIAKFYPSIYKTKFNIIR LGIGIAILATLAYIFLKNRKKVIL >Mature_263_residues AYDIKLKNKNEEELERIANIIMNLFLYQVVFFIIFIMLANILGYVGLNKNIIQPYSKLAGEILAYIFFIKNYIKDNRYKL KFKNTLHFKGYVFIAMLIIGYILVYDNTIDIVLSKVVKNSWFYDVMTKEMKNPIVGFIGTVIMAPIFEEIVYRGIMLDEL LVKYNYKKAIIISALIFAVIHLNFVQLTDAFIAGIILGTVYCKTKCLIPCIIIHFLNNLFCNIAKFYPSIYKTKFNIIRL GIGIAILATLAYIFLKNRKKVIL
Specific function: Unknown
COG id: COG1266
COG function: function code R; Predicted metal-dependent membrane protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30645; Mature: 30514
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYDIKLKNKNEEELERIANIIMNLFLYQVVFFIIFIMLANILGYVGLNKNIIQPYSKLA CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH GEILAYIFFIKNYIKDNRYKLKFKNTLHFKGYVFIAMLIIGYILVYDNTIDIVLSKVVKN HHHHHHHHHHHHHHHCCCEEEEECCEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC SWFYDVMTKEMKNPIVGFIGTVIMAPIFEEIVYRGIMLDELLVKYNYKKAIIISALIFAV CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH IHLNFVQLTDAFIAGIILGTVYCKTKCLIPCIIIHFLNNLFCNIAKFYPSIYKTKFNIIR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGIGIAILATLAYIFLKNRKKVIL HHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure AYDIKLKNKNEEELERIANIIMNLFLYQVVFFIIFIMLANILGYVGLNKNIIQPYSKLA CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH GEILAYIFFIKNYIKDNRYKLKFKNTLHFKGYVFIAMLIIGYILVYDNTIDIVLSKVVKN HHHHHHHHHHHHHHHCCCEEEEECCEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC SWFYDVMTKEMKNPIVGFIGTVIMAPIFEEIVYRGIMLDELLVKYNYKKAIIISALIFAV CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH IHLNFVQLTDAFIAGIILGTVYCKTKCLIPCIIIHFLNNLFCNIAKFYPSIYKTKFNIIR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGIGIAILATLAYIFLKNRKKVIL HHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA