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The map label for this gene is codY

Identifier: 170755234

GI number: 170755234

Start: 2556489

End: 2557265

Strand: Reverse

Name: codY

Synonym: CLD_2204

Alternate gene names: 170755234

Gene position: 2557265-2556489 (Counterclockwise)

Preceding gene: 170755393

Following gene: 170754471

Centisome position: 64.61

GC content: 27.67

Gene sequence:

>777_bases
ATGAGTTCATTACTAGATAAAACAAGAATGTTGAATAGAATATTGCAAAAATCAGGCACAGAGCCAGTAGATTTCGAAGA
TATATGTGATTTATTAAGTGACGTTTTAGCATGTAACGTATATATAATTAGTAGAAAAGGAAAGATATTGGGATCTAAAT
TTTACTCAGGATTTGAATGTGAAGAAGTAAGGGAAGTTGTTTTAAAAGAAAATAGATTTCCAGACTTCTACAATAATAAA
TTGTTAAATGTAAATGAGACTTTATCAAATTCACCTAACCATGATAAATGTGTATTTGATAATTTAAAGGATTGTTCAAT
AAACAATAAATTATCAACAATAGTTCCTATAAATGGAAATAGAGAAAGATTAGGTACATTATTATTAGCTAGATTTGATA
AAGAATTTACTGATGAAGATTTGATACTAGCAGAATACAGTGCTACAATAATTGGTCTTGAAATATTAAGATCAAAACAG
GATCAAATAGAAGAAGAAGCAAGAAAAAAAGCTGTAGTTCAACTAGCTATAGGAACATTATCTTATTCAGAATTAGAAGC
TGTAGAACATATATTTAATGAGTTAGATGGCACAGAAGGATTATTAGTAGCATCTAAAATAGCAGATAAAGTTGGAATAA
CAAGATCTGTTATAGTGAATGCATTAAGAAAATTTGAAAGTGCAGGGGTAATTGAATCAAGATCCCTAGGTATGAAAGGT
ACTCACATTAGAATATTAAATGATAAACTTTTAGAAGAATTAAAGAAGATAAAATAG

Upstream 100 bases:

>100_bases
ATATTTTTAATAGTCAAAATTTTTAAAGGCATAATATGAAAAAGCAGCAGGAATCAATATATAAATTAAAGTAAAAGAGG
TAATAGAAGGAGGAAAACCC

Downstream 100 bases:

>100_bases
TAAAGAAGTCTTAGGACTTCTTTATTTTTTAGTACAATTATGAAATAATTCTTAGGTAGGAAATTAATGGATAAAAATAT
ACCAAAATTTTTTTGAAATT

Product: transcriptional repressor CodY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MSSLLDKTRMLNRILQKSGTEPVDFEDICDLLSDVLACNVYIISRKGKILGSKFYSGFECEEVREVVLKENRFPDFYNNK
LLNVNETLSNSPNHDKCVFDNLKDCSINNKLSTIVPINGNRERLGTLLLARFDKEFTDEDLILAEYSATIIGLEILRSKQ
DQIEEEARKKAVVQLAIGTLSYSELEAVEHIFNELDGTEGLLVASKIADKVGITRSVIVNALRKFESAGVIESRSLGMKG
THIRILNDKLLEELKKIK

Sequences:

>Translated_258_residues
MSSLLDKTRMLNRILQKSGTEPVDFEDICDLLSDVLACNVYIISRKGKILGSKFYSGFECEEVREVVLKENRFPDFYNNK
LLNVNETLSNSPNHDKCVFDNLKDCSINNKLSTIVPINGNRERLGTLLLARFDKEFTDEDLILAEYSATIIGLEILRSKQ
DQIEEEARKKAVVQLAIGTLSYSELEAVEHIFNELDGTEGLLVASKIADKVGITRSVIVNALRKFESAGVIESRSLGMKG
THIRILNDKLLEELKKIK
>Mature_257_residues
SSLLDKTRMLNRILQKSGTEPVDFEDICDLLSDVLACNVYIISRKGKILGSKFYSGFECEEVREVVLKENRFPDFYNNKL
LNVNETLSNSPNHDKCVFDNLKDCSINNKLSTIVPINGNRERLGTLLLARFDKEFTDEDLILAEYSATIIGLEILRSKQD
QIEEEARKKAVVQLAIGTLSYSELEAVEHIFNELDGTEGLLVASKIADKVGITRSVIVNALRKFESAGVIESRSLGMKGT
HIRILNDKLLEELKKIK

Specific function: DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of

COG id: COG4465

COG function: function code K; Pleiotropic transcriptional repressor

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CodY family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014154
- InterPro:   IPR010312
- InterPro:   IPR013198
- InterPro:   IPR011991 [H]

Pfam domain/function: PF06018 CodY; PF08222 HTH_CodY [H]

EC number: NA

Molecular weight: Translated: 29071; Mature: 28940

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLLDKTRMLNRILQKSGTEPVDFEDICDLLSDVLACNVYIISRKGKILGSKFYSGFEC
CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCHHHHHHCCCCCH
EEVREVVLKENRFPDFYNNKLLNVNETLSNSPNHDKCVFDNLKDCSINNKLSTIVPINGN
HHHHHHHHHCCCCCCHHCCCEECCCHHHCCCCCCCCHHHCCCCCCCCCCCCEEEEECCCC
RERLGTLLLARFDKEFTDEDLILAEYSATIIGLEILRSKQDQIEEEARKKAVVQLAIGTL
HHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC
SYSELEAVEHIFNELDGTEGLLVASKIADKVGITRSVIVNALRKFESAGVIESRSLGMKG
CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEECCCCCCCC
THIRILNDKLLEELKKIK
CEEEEHHHHHHHHHHHCC
>Mature Secondary Structure 
SSLLDKTRMLNRILQKSGTEPVDFEDICDLLSDVLACNVYIISRKGKILGSKFYSGFEC
CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCHHHHHHCCCCCH
EEVREVVLKENRFPDFYNNKLLNVNETLSNSPNHDKCVFDNLKDCSINNKLSTIVPINGN
HHHHHHHHHCCCCCCHHCCCEECCCHHHCCCCCCCCHHHCCCCCCCCCCCCEEEEECCCC
RERLGTLLLARFDKEFTDEDLILAEYSATIIGLEILRSKQDQIEEEARKKAVVQLAIGTL
HHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC
SYSELEAVEHIFNELDGTEGLLVASKIADKVGITRSVIVNALRKFESAGVIESRSLGMKG
CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEECCCCCCCC
THIRILNDKLLEELKKIK
CEEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA