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The map label for this gene is yclF [H]

Identifier: 170755216

GI number: 170755216

Start: 1872598

End: 1873977

Strand: Reverse

Name: yclF [H]

Synonym: CLD_2875

Alternate gene names: 170755216

Gene position: 1873977-1872598 (Counterclockwise)

Preceding gene: 170756333

Following gene: 170756602

Centisome position: 47.34

GC content: 34.2

Gene sequence:

>1380_bases
ATGGCAAAAGCTGAAAATTCAAAACATCCTTCAGGTCTTTATATCTGTGGGATGACAGTTGCTTGGGAAAGATTTTCATT
TTATGGTGTAAAATCTGTACTTATTCTTTTTTTAGCAACTCAAATTATTAAAGGTGGTTTTGGCTTAAGCAAAGCGGATG
CGGCATCTTTGGTATCTACTTACGCAGCGCTAACTTATTTAGCACCAGTAATAGGTGGTTGGATTTGTGATCGTTATCTA
GGAGCAAGATACTGCGTAGTATTAGGTACTTTATTAATGGCTGCTGGTAACTTTGTCCTTTTTCTAAATCAAGGTAAGTT
TGGAGTCTATGCAATGATTATATTGGTAACTATTGGTACTGGTTTCTTTAAAGGAAATCTAAATACAATGGTTGGTCTTT
TGTACGATCAAAATGATTCTAGAAAAGATGGTGCATTCTCAATTATGTATTCGTTTACAAATATAGGTGCTATGTTTGGA
CCTCTTTTATTTGGACTTTTTGCAGATCAAATATTTTCTACAAAAATTAATGGAGAAATAGCTCACTATGGATATAAAGC
TGTTTTCTTAGGTGGAGCTATAGCCTGTCTTCTATCAGGTCTTTCCTTTGCCCTTGGTGTTAAAAAGACAATGGCGGATT
CTGGTAAAATAGCAGCTGCTAAGCTCACTCCTGCTACAACAGGTGCCGATAATAAAAAACAATCAACTGCACCTTTAACA
AAGGCTGAAAAAAATAGAACTATAGTTATATTCGTATTAACATTCTTTTCTATATTCTTCTGGACAGCTTATAATCAGGC
CTCTACATCTATAGCTCTATATACTAGAGATTTCATAGATATGAGTATAGGAAGCTTTACTATGCCAGTACCTTGGCTAG
ATTCATTTAATGGATTTATGTGTGTTATATTAGGACCTATAATGTCTGCTCTTTGGATTAAGCTTGAAAAGTCTAAAAGA
GGTGATTTAAACATAACACAAAAAATGGCTCTTGGCTTTGTACTATTAGCTGTTGGTTTTGTATTTATGATATTTGCAGT
ATTGCAAAGAGGCGGTTCTGCTGACCCTGCAATAAAGGCTAGTGTAATTTGGGTATTATTATTTTATGTATTACAAACTA
CTGGAGAAATGTGTTTCTCACCAATTGGAAATTCAATGGTTAATAGGCTTGCACCACCTAAATATGCTTCTGTATTAATG
GGAGTTTGGTTCTTAAGTACTTTTGCAGCTAATAAATTAGCCGGATACGGACAGGCGTTCATAGACAAATTAGGACCATT
ACAAGTATTTATAGCCATTCCTGTAGCTCTTATTGCAAATGCTATAATAATATTTGCACTTAATAGAAAATTAACTAATA
TGGCTGAGCAATTTGATTAA

Upstream 100 bases:

>100_bases
TTAATATTTATTGCTTTTATTATATTTTGTTATATATTAAGTTTTTAACTTAATAATATATGTTTTAACATTAACTTTTA
AATAAGGGGGGTTTTATTAA

Downstream 100 bases:

>100_bases
TATAAAAGTCCCACATTTTATTGTGGGATTTTTATTAATTTATTAAATCGTTTTTAAATTCTTCATCCATTATAATATGC
CTAACTAATTTTATATTTAA

Product: amino acid/peptide transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 459; Mature: 458

Protein sequence:

>459_residues
MAKAENSKHPSGLYICGMTVAWERFSFYGVKSVLILFLATQIIKGGFGLSKADAASLVSTYAALTYLAPVIGGWICDRYL
GARYCVVLGTLLMAAGNFVLFLNQGKFGVYAMIILVTIGTGFFKGNLNTMVGLLYDQNDSRKDGAFSIMYSFTNIGAMFG
PLLFGLFADQIFSTKINGEIAHYGYKAVFLGGAIACLLSGLSFALGVKKTMADSGKIAAAKLTPATTGADNKKQSTAPLT
KAEKNRTIVIFVLTFFSIFFWTAYNQASTSIALYTRDFIDMSIGSFTMPVPWLDSFNGFMCVILGPIMSALWIKLEKSKR
GDLNITQKMALGFVLLAVGFVFMIFAVLQRGGSADPAIKASVIWVLLFYVLQTTGEMCFSPIGNSMVNRLAPPKYASVLM
GVWFLSTFAANKLAGYGQAFIDKLGPLQVFIAIPVALIANAIIIFALNRKLTNMAEQFD

Sequences:

>Translated_459_residues
MAKAENSKHPSGLYICGMTVAWERFSFYGVKSVLILFLATQIIKGGFGLSKADAASLVSTYAALTYLAPVIGGWICDRYL
GARYCVVLGTLLMAAGNFVLFLNQGKFGVYAMIILVTIGTGFFKGNLNTMVGLLYDQNDSRKDGAFSIMYSFTNIGAMFG
PLLFGLFADQIFSTKINGEIAHYGYKAVFLGGAIACLLSGLSFALGVKKTMADSGKIAAAKLTPATTGADNKKQSTAPLT
KAEKNRTIVIFVLTFFSIFFWTAYNQASTSIALYTRDFIDMSIGSFTMPVPWLDSFNGFMCVILGPIMSALWIKLEKSKR
GDLNITQKMALGFVLLAVGFVFMIFAVLQRGGSADPAIKASVIWVLLFYVLQTTGEMCFSPIGNSMVNRLAPPKYASVLM
GVWFLSTFAANKLAGYGQAFIDKLGPLQVFIAIPVALIANAIIIFALNRKLTNMAEQFD
>Mature_458_residues
AKAENSKHPSGLYICGMTVAWERFSFYGVKSVLILFLATQIIKGGFGLSKADAASLVSTYAALTYLAPVIGGWICDRYLG
ARYCVVLGTLLMAAGNFVLFLNQGKFGVYAMIILVTIGTGFFKGNLNTMVGLLYDQNDSRKDGAFSIMYSFTNIGAMFGP
LLFGLFADQIFSTKINGEIAHYGYKAVFLGGAIACLLSGLSFALGVKKTMADSGKIAAAKLTPATTGADNKKQSTAPLTK
AEKNRTIVIFVLTFFSIFFWTAYNQASTSIALYTRDFIDMSIGSFTMPVPWLDSFNGFMCVILGPIMSALWIKLEKSKRG
DLNITQKMALGFVLLAVGFVFMIFAVLQRGGSADPAIKASVIWVLLFYVLQTTGEMCFSPIGNSMVNRLAPPKYASVLMG
VWFLSTFAANKLAGYGQAFIDKLGPLQVFIAIPVALIANAIIIFALNRKLTNMAEQFD

Specific function: Unknown

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family [H]

Homologues:

Organism=Escherichia coli, GI1787922, Length=486, Percent_Identity=28.3950617283951, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1790572, Length=439, Percent_Identity=29.3849658314351, Blast_Score=155, Evalue=6e-39,
Organism=Escherichia coli, GI1786927, Length=451, Percent_Identity=27.7161862527716, Blast_Score=151, Evalue=9e-38,
Organism=Escherichia coli, GI1789911, Length=443, Percent_Identity=26.410835214447, Blast_Score=127, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI71987453, Length=355, Percent_Identity=25.6338028169014, Blast_Score=65, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 49735; Mature: 49604

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAENSKHPSGLYICGMTVAWERFSFYGVKSVLILFLATQIIKGGFGLSKADAASLVST
CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
YAALTYLAPVIGGWICDRYLGARYCVVLGTLLMAAGNFVLFLNQGKFGVYAMIILVTIGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCC
GFFKGNLNTMVGLLYDQNDSRKDGAFSIMYSFTNIGAMFGPLLFGLFADQIFSTKINGEI
CCEECCHHHHEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
AHYGYKAVFLGGAIACLLSGLSFALGVKKTMADSGKIAAAKLTPATTGADNKKQSTAPLT
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCC
KAEKNRTIVIFVLTFFSIFFWTAYNQASTSIALYTRDFIDMSIGSFTMPVPWLDSFNGFM
CCCCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHCCCCCCCCCCCHHCCCCHH
CVILGPIMSALWIKLEKSKRGDLNITQKMALGFVLLAVGFVFMIFAVLQRGGSADPAIKA
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
SVIWVLLFYVLQTTGEMCFSPIGNSMVNRLAPPKYASVLMGVWFLSTFAANKLAGYGQAF
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH
IDKLGPLQVFIAIPVALIANAIIIFALNRKLTNMAEQFD
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKAENSKHPSGLYICGMTVAWERFSFYGVKSVLILFLATQIIKGGFGLSKADAASLVST
CCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
YAALTYLAPVIGGWICDRYLGARYCVVLGTLLMAAGNFVLFLNQGKFGVYAMIILVTIGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCC
GFFKGNLNTMVGLLYDQNDSRKDGAFSIMYSFTNIGAMFGPLLFGLFADQIFSTKINGEI
CCEECCHHHHEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
AHYGYKAVFLGGAIACLLSGLSFALGVKKTMADSGKIAAAKLTPATTGADNKKQSTAPLT
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCC
KAEKNRTIVIFVLTFFSIFFWTAYNQASTSIALYTRDFIDMSIGSFTMPVPWLDSFNGFM
CCCCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHCCCCCCCCCCCHHCCCCHH
CVILGPIMSALWIKLEKSKRGDLNITQKMALGFVLLAVGFVFMIFAVLQRGGSADPAIKA
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
SVIWVLLFYVLQTTGEMCFSPIGNSMVNRLAPPKYASVLMGVWFLSTFAANKLAGYGQAF
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH
IDKLGPLQVFIAIPVALIANAIIIFALNRKLTNMAEQFD
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]