| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170755211
Identifier: 170755211
GI number: 170755211
Start: 3268254
End: 3269594
Strand: Reverse
Name: 170755211
Synonym: CLD_1525
Alternate gene names: NA
Gene position: 3269594-3268254 (Counterclockwise)
Preceding gene: 170754398
Following gene: 170756474
Centisome position: 82.6
GC content: 24.68
Gene sequence:
>1341_bases GTGGCTACAATAGGAGAACAATTATTGCAACCTGAAAGTGGATGGATAAGGTATGATGATACTGATAAAAACATCAGCTA CATCGGAAATGAATGGAAAACAGATTATGATTCTCATTATTCAAATACAGTAGGAGATAAAATATGTTTTAATTTTGTTG GAAGTAAAATAAGAATATTAGTATTTACGAATAATAGTCATTCAAAAGATGTTAAAATAAAAATAAATAATACTGTTTAT AGTTATGTGGAGTATATATATCCAATCACGCCTGCTTCATTAGTATTAGTTTTTGAAAAAGAAATGCCTAGTTTTAAAGA ATATAGTGCTGAAATATATATTGAAAGAAAAACAGATAATCAGTATGGATGGTTTGGTTTAGATTCAATAGACATAGACG AAAATGGAAAGTTGAAGCCTTATAATCCTAGTATATCGTTAATAACATGGAATCCTAATGACAAAACAGGAAATTACACT TTGAGTAATAATAATTTAACAGCTTATCTTTCAACAATTCCTCCCTATGGATATAATGGGATAAAAGCAACAAAGTTTAT TGCTAATGGTAAGTTTTATGCAGAATTTTTAGTAAATGATATGCCAAATGTATGTACATTAGGTTTGGCTACTTATGAAG CTAGTTTATCAGGATATACTTCTATAACGCAATTCCCAAATAATATTAGGACTAGTGCAATTAATGCTACAAAAAATACA TTTATAGGAATGGCTTTTGATTTAGATAATCATATTATAAATTTTTATATTAATGGTATATTAGATACAAATTATACAAT TACATTAGAGAATGAAGTATATACTGCTATTATGATAAATAATAATGGAGAAAATAAAGGTGGAACTATAACAGCAAATT TCGGAGCAACTCCATTTAATATTGTTAGTTCTAATAAAAGTACATGGAATAAATTAGTAGATAAGGGATATAAACCATAT GATGTTTATAATGCTAATTGGGAGTGGAGGGTTTCAAAATATTTAATAAAACAAAATAATAATTATTACTCAATAAACAA TAATTATATAGATTTAGGAATTATAAATAATAACGAAGAGCTAGATAACTTAATAAATGAATATGGTTATAATGATTTAT CCATACTCACTAAAGAATTAAATACTAAAAAAATACCTACAAAATTAGAAAATGATTATTACAAATCTTTTGATATTAAT CTAAATGATGTAAAGGATAATATAAATCTTATAGAAGAAGATGATAAAAAATATATTGAATATGGCTGCAATAATTATAA AATATCAGATAAAATTAAAGAAATCAATAATAGCAAATTTGAAGTATTAATGAAAGAATAA
Upstream 100 bases:
>100_bases ATGATTTATAATTGTGAATCATTTAGACCAATAGATAAATTAAAGAAAAATAGTGATATTTGTAATATATTATTTAGGGA AGTGTAGGAGGTGATATAAA
Downstream 100 bases:
>100_bases TAATGAGAGCGATATAGAATATTCATTTTAAACAAAATAATTTTAAAATATAGATTGGAAGTGATAAAATGAAAAAATGG TCAAATGATTTAACAGATAG
Product: hypothetical protein
Products: NA
Alternate protein names: Contains Cell Adhesion Domain Protein; Phage-Like Protein; F5/8 Type C Domain Protein; Ig Group 2 Domain Protein; Cell Adhesion Domain Protein; Ig Domain-Containing Protein
Number of amino acids: Translated: 446; Mature: 445
Protein sequence:
>446_residues MATIGEQLLQPESGWIRYDDTDKNISYIGNEWKTDYDSHYSNTVGDKICFNFVGSKIRILVFTNNSHSKDVKIKINNTVY SYVEYIYPITPASLVLVFEKEMPSFKEYSAEIYIERKTDNQYGWFGLDSIDIDENGKLKPYNPSISLITWNPNDKTGNYT LSNNNLTAYLSTIPPYGYNGIKATKFIANGKFYAEFLVNDMPNVCTLGLATYEASLSGYTSITQFPNNIRTSAINATKNT FIGMAFDLDNHIINFYINGILDTNYTITLENEVYTAIMINNNGENKGGTITANFGATPFNIVSSNKSTWNKLVDKGYKPY DVYNANWEWRVSKYLIKQNNNYYSINNNYIDLGIINNNEELDNLINEYGYNDLSILTKELNTKKIPTKLENDYYKSFDIN LNDVKDNINLIEEDDKKYIEYGCNNYKISDKIKEINNSKFEVLMKE
Sequences:
>Translated_446_residues MATIGEQLLQPESGWIRYDDTDKNISYIGNEWKTDYDSHYSNTVGDKICFNFVGSKIRILVFTNNSHSKDVKIKINNTVY SYVEYIYPITPASLVLVFEKEMPSFKEYSAEIYIERKTDNQYGWFGLDSIDIDENGKLKPYNPSISLITWNPNDKTGNYT LSNNNLTAYLSTIPPYGYNGIKATKFIANGKFYAEFLVNDMPNVCTLGLATYEASLSGYTSITQFPNNIRTSAINATKNT FIGMAFDLDNHIINFYINGILDTNYTITLENEVYTAIMINNNGENKGGTITANFGATPFNIVSSNKSTWNKLVDKGYKPY DVYNANWEWRVSKYLIKQNNNYYSINNNYIDLGIINNNEELDNLINEYGYNDLSILTKELNTKKIPTKLENDYYKSFDIN LNDVKDNINLIEEDDKKYIEYGCNNYKISDKIKEINNSKFEVLMKE >Mature_445_residues ATIGEQLLQPESGWIRYDDTDKNISYIGNEWKTDYDSHYSNTVGDKICFNFVGSKIRILVFTNNSHSKDVKIKINNTVYS YVEYIYPITPASLVLVFEKEMPSFKEYSAEIYIERKTDNQYGWFGLDSIDIDENGKLKPYNPSISLITWNPNDKTGNYTL SNNNLTAYLSTIPPYGYNGIKATKFIANGKFYAEFLVNDMPNVCTLGLATYEASLSGYTSITQFPNNIRTSAINATKNTF IGMAFDLDNHIINFYINGILDTNYTITLENEVYTAIMINNNGENKGGTITANFGATPFNIVSSNKSTWNKLVDKGYKPYD VYNANWEWRVSKYLIKQNNNYYSINNNYIDLGIINNNEELDNLINEYGYNDLSILTKELNTKKIPTKLENDYYKSFDINL NDVKDNINLIEEDDKKYIEYGCNNYKISDKIKEINNSKFEVLMKE
Specific function: Unknown
COG id: COG5492
COG function: function code N; Bacterial surface proteins containing Ig-like domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51292; Mature: 51161
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATIGEQLLQPESGWIRYDDTDKNISYIGNEWKTDYDSHYSNTVGDKICFNFVGSKIRIL CCCCCHHHCCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEE VFTNNSHSKDVKIKINNTVYSYVEYIYPITPASLVLVFEKEMPSFKEYSAEIYIERKTDN EEECCCCCCEEEEEECCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCC QYGWFGLDSIDIDENGKLKPYNPSISLITWNPNDKTGNYTLSNNNLTAYLSTIPPYGYNG CCCEEECCEEEECCCCCEEECCCCEEEEEECCCCCCCCEEEECCCEEEEEECCCCCCCCC IKATKFIANGKFYAEFLVNDMPNVCTLGLATYEASLSGYTSITQFPNNIRTSAINATKNT CEEEEEEECCCEEEEEHHCCCCCCEEEEEEEEECCCCCCEEHHHCCCCHHHEEECCCCCE FIGMAFDLDNHIINFYINGILDTNYTITLENEVYTAIMINNNGENKGGTITANFGATPFN EEEEEEECCCEEEEEEEEEEECCCEEEEECCCEEEEEEEECCCCCCCCEEEEECCCCCEE IVSSNKSTWNKLVDKGYKPYDVYNANWEWRVSKYLIKQNNNYYSINNNYIDLGIINNNEE EEECCCHHHHHHHHCCCCCCEEECCCEEEEEEEEEEECCCCEEEECCCEEEEEEECCCHH LDNLINEYGYNDLSILTKELNTKKIPTKLENDYYKSFDINLNDVKDNINLIEEDDKKYIE HHHHHHHHCCCHHHHHHHHCCCCCCCCHHCCCEEEEECCCHHCCCCCCCEEECCCHHHHH YGCNNYKISDKIKEINNSKFEVLMKE HCCCCEEEHHHHHHCCCCEEEEEEEC >Mature Secondary Structure ATIGEQLLQPESGWIRYDDTDKNISYIGNEWKTDYDSHYSNTVGDKICFNFVGSKIRIL CCCCHHHCCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEE VFTNNSHSKDVKIKINNTVYSYVEYIYPITPASLVLVFEKEMPSFKEYSAEIYIERKTDN EEECCCCCCEEEEEECCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCC QYGWFGLDSIDIDENGKLKPYNPSISLITWNPNDKTGNYTLSNNNLTAYLSTIPPYGYNG CCCEEECCEEEECCCCCEEECCCCEEEEEECCCCCCCCEEEECCCEEEEEECCCCCCCCC IKATKFIANGKFYAEFLVNDMPNVCTLGLATYEASLSGYTSITQFPNNIRTSAINATKNT CEEEEEEECCCEEEEEHHCCCCCCEEEEEEEEECCCCCCEEHHHCCCCHHHEEECCCCCE FIGMAFDLDNHIINFYINGILDTNYTITLENEVYTAIMINNNGENKGGTITANFGATPFN EEEEEEECCCEEEEEEEEEEECCCEEEEECCCEEEEEEEECCCCCCCCEEEEECCCCCEE IVSSNKSTWNKLVDKGYKPYDVYNANWEWRVSKYLIKQNNNYYSINNNYIDLGIINNNEE EEECCCHHHHHHHHCCCCCCEEECCCEEEEEEEEEEECCCCEEEECCCEEEEEEECCCHH LDNLINEYGYNDLSILTKELNTKKIPTKLENDYYKSFDINLNDVKDNINLIEEDDKKYIE HHHHHHHHCCCHHHHHHHHCCCCCCCCHHCCCEEEEECCCHHCCCCCCCEEECCCHHHHH YGCNNYKISDKIKEINNSKFEVLMKE HCCCCEEEHHHHHHCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA