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The map label for this gene is ydjZ [H]

Identifier: 170755185

GI number: 170755185

Start: 2790386

End: 2791123

Strand: Reverse

Name: ydjZ [H]

Synonym: CLD_1955

Alternate gene names: 170755185

Gene position: 2791123-2790386 (Counterclockwise)

Preceding gene: 170756925

Following gene: 170754403

Centisome position: 70.51

GC content: 32.25

Gene sequence:

>738_bases
ATGGATCAAAAGAAAAAGAAGAGTTTAATAATTAAATTAGGTTTTCTTTTAGGCATAATACTTTTGTATTTCTTAGTTCC
TGGTTTTAAAAATGGAGTAAATAAAATAGCTTCGATGCTTGCTAGATTAAATATAGAAGAGGTAAAAAATTACATAAAGT
CCTTTGGTGTTTGGGCACCACTTATATCTATGGCTCTTATGATGTTTCAATCTATTGCAGCTCCACTTCCAGCCTTCATA
ATAACTTTTGCTAATGCTTGGGTATTCGGATGGGCCTTTGGAGCTTTAATATCTTGGACAGGAGCTATGATGGGAGCTGC
TCTATGTTTCTATATAAGTAAATTTTATGGAAGACCTGTAGCAGAAAAGATAATTGGTAAAAAAGCATTAGATATGACAG
ATAAATTTTTTCATAAGTATGGTAAATATGCTATATTAATAGCTAGGCTTCTACCCTTTATATCCTTTGATGCTATAAGT
TATGCAGCTGGGCTTACAGAAATGTCTTTTTGGGCTTTCTTTTGGGCTACAGGAGTTGGACAACTTCCAGCTACTATAGT
TTACTCCATATTAGGACAAAACATAGGTAATATAGCAAAAATGGGTCTATGGATATTTTCAGGAGTAGTGGCTCTAATAG
TATTTGCGATAGCTGTTAAAAAGTATTTAATGGATAAAAAAAATAGAGAGGATAAAGCTAAGGTTAATAATGAAAATTTA
CAAGTCACAAAAGAATAG

Upstream 100 bases:

>100_bases
GTAGTATTGTTAGTTTTGCTATGTTTAGCTTCTTTTATTATGAAAAAGAAGCTATCCTTTAATAAATTACAGAAAAATAT
AATTAAGAAAGGGGATAGTT

Downstream 100 bases:

>100_bases
TAGAATAAGAGACATAGTCTTTAAAGGGAATATGTCTCTTATTCTATACTACTTTAAAGGCTTAGATGGTTATTTAGCCT
TAATTTAATAAATAATAAGT

Product: DedA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MDQKKKKSLIIKLGFLLGIILLYFLVPGFKNGVNKIASMLARLNIEEVKNYIKSFGVWAPLISMALMMFQSIAAPLPAFI
ITFANAWVFGWAFGALISWTGAMMGAALCFYISKFYGRPVAEKIIGKKALDMTDKFFHKYGKYAILIARLLPFISFDAIS
YAAGLTEMSFWAFFWATGVGQLPATIVYSILGQNIGNIAKMGLWIFSGVVALIVFAIAVKKYLMDKKNREDKAKVNNENL
QVTKE

Sequences:

>Translated_245_residues
MDQKKKKSLIIKLGFLLGIILLYFLVPGFKNGVNKIASMLARLNIEEVKNYIKSFGVWAPLISMALMMFQSIAAPLPAFI
ITFANAWVFGWAFGALISWTGAMMGAALCFYISKFYGRPVAEKIIGKKALDMTDKFFHKYGKYAILIARLLPFISFDAIS
YAAGLTEMSFWAFFWATGVGQLPATIVYSILGQNIGNIAKMGLWIFSGVVALIVFAIAVKKYLMDKKNREDKAKVNNENL
QVTKE
>Mature_245_residues
MDQKKKKSLIIKLGFLLGIILLYFLVPGFKNGVNKIASMLARLNIEEVKNYIKSFGVWAPLISMALMMFQSIAAPLPAFI
ITFANAWVFGWAFGALISWTGAMMGAALCFYISKFYGRPVAEKIIGKKALDMTDKFFHKYGKYAILIARLLPFISFDAIS
YAAGLTEMSFWAFFWATGVGQLPATIVYSILGQNIGNIAKMGLWIFSGVVALIVFAIAVKKYLMDKKNREDKAKVNNENL
QVTKE

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Escherichia coli, GI1788049, Length=221, Percent_Identity=47.0588235294118, Blast_Score=192, Evalue=1e-50,
Organism=Escherichia coli, GI87081964, Length=123, Percent_Identity=26.0162601626016, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 27345; Mature: 27345

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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EEECC
>Mature Secondary Structure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EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]