| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170755167
Identifier: 170755167
GI number: 170755167
Start: 1511204
End: 1511845
Strand: Direct
Name: 170755167
Synonym: CLD_3188
Alternate gene names: NA
Gene position: 1511204-1511845 (Clockwise)
Preceding gene: 170754506
Following gene: 170756427
Centisome position: 38.18
GC content: 28.5
Gene sequence:
>642_bases ATGGATAAAAATGTTGCATGGTATATTAAAAAACAGGTTGAAAGAACTATAAAGAATCTAAATAGCCGAAATATGGAGGG ATATTATATTAATAATATAGATCAATTACTTCAAAAATTAAAGGAGCTTCTACCAGAAGGTTCAATAGTTGGCGTAGGAG ATTCAATGACTCTTTTTGAAACTGGGGTAATAGATTTTTTAAGAAGTAAAAACTTTAATTTTTTAGATAAATATCAAGAT AAGCTTACAAATGATGAAAAAAGAGATATATATATTAAGAATTTTTCTGCAGATACTTTTATTTGTAGTACTAATGCAAT AACTGAAAGTGGAGAACTGTACAATGTAGATGGAAATGGAAGTAGAGTTGCACCAATGATATATGGACCCAAACAGGTTA TTCTTATAGTTGGAATAAATAAAATTGTTAAAAATATAGAAGAGGCTGAAATTAGAGTAAGAAGCTATGCTGCTCCTATT GATGCAAAAAGATTAAATAGAGATACCCCATGTACACAATTGGGCTATTGTGTTGATTGTAAAAGCCCAAATAGAATCTG TAATGATTTTGTTGTAATTAAGGGACAGTTTATTAAAGGGAGAATAAAAGTATTAATCCTTGGAGAAAATTTAGGTTATT AA
Upstream 100 bases:
>100_bases TTGCAATGTTTTAAAATAAAGTTGATTAAATTTATATTATAGAGATATATGCAAGATTGGCTTATTTATCTGGAACTTTA ATTTTAGGAGTGATAGGAAT
Downstream 100 bases:
>100_bases ATTATTTACTTATAAATTAAAAGTATATAGTAATATAAAGTAATCATATTTAAATATGCTATAAGAGAATTAGGTTGTAA ATAATGTGGAGTTTGTTTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 213; Mature: 213
Protein sequence:
>213_residues MDKNVAWYIKKQVERTIKNLNSRNMEGYYINNIDQLLQKLKELLPEGSIVGVGDSMTLFETGVIDFLRSKNFNFLDKYQD KLTNDEKRDIYIKNFSADTFICSTNAITESGELYNVDGNGSRVAPMIYGPKQVILIVGINKIVKNIEEAEIRVRSYAAPI DAKRLNRDTPCTQLGYCVDCKSPNRICNDFVVIKGQFIKGRIKVLILGENLGY
Sequences:
>Translated_213_residues MDKNVAWYIKKQVERTIKNLNSRNMEGYYINNIDQLLQKLKELLPEGSIVGVGDSMTLFETGVIDFLRSKNFNFLDKYQD KLTNDEKRDIYIKNFSADTFICSTNAITESGELYNVDGNGSRVAPMIYGPKQVILIVGINKIVKNIEEAEIRVRSYAAPI DAKRLNRDTPCTQLGYCVDCKSPNRICNDFVVIKGQFIKGRIKVLILGENLGY >Mature_213_residues MDKNVAWYIKKQVERTIKNLNSRNMEGYYINNIDQLLQKLKELLPEGSIVGVGDSMTLFETGVIDFLRSKNFNFLDKYQD KLTNDEKRDIYIKNFSADTFICSTNAITESGELYNVDGNGSRVAPMIYGPKQVILIVGINKIVKNIEEAEIRVRSYAAPI DAKRLNRDTPCTQLGYCVDCKSPNRICNDFVVIKGQFIKGRIKVLILGENLGY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24234; Mature: 24234
Theoretical pI: Translated: 8.66; Mature: 8.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKNVAWYIKKQVERTIKNLNSRNMEGYYINNIDQLLQKLKELLPEGSIVGVGDSMTLFE CCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHCCCCCEEECCCCCHHHH TGVIDFLRSKNFNFLDKYQDKLTNDEKRDIYIKNFSADTFICSTNAITESGELYNVDGNG HHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCC SRVAPMIYGPKQVILIVGINKIVKNIEEAEIRVRSYAAPIDAKRLNRDTPCTQLGYCVDC CEEEEEEECCCEEEEEEEHHHHHCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCEEEEC KSPNRICNDFVVIKGQFIKGRIKVLILGENLGY CCCCHHHCCEEEEEEEEEECEEEEEEEECCCCC >Mature Secondary Structure MDKNVAWYIKKQVERTIKNLNSRNMEGYYINNIDQLLQKLKELLPEGSIVGVGDSMTLFE CCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHCCCCCEEECCCCCHHHH TGVIDFLRSKNFNFLDKYQDKLTNDEKRDIYIKNFSADTFICSTNAITESGELYNVDGNG HHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCC SRVAPMIYGPKQVILIVGINKIVKNIEEAEIRVRSYAAPIDAKRLNRDTPCTQLGYCVDC CEEEEEEECCCEEEEEEEHHHHHCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCEEEEC KSPNRICNDFVVIKGQFIKGRIKVLILGENLGY CCCCHHHCCEEEEEEEEEECEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA