| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170755128
Identifier: 170755128
GI number: 170755128
Start: 1238635
End: 1239594
Strand: Direct
Name: 170755128
Synonym: CLD_3450
Alternate gene names: NA
Gene position: 1238635-1239594 (Clockwise)
Preceding gene: 170754336
Following gene: 170756428
Centisome position: 31.29
GC content: 26.04
Gene sequence:
>960_bases GTGTTAAATTTTAAAAGGCTAACTATTAATGACAAAAAATTATTTGAAAGTTATATAAAACCATATAATTTTTTAAATTG CGAGTATTCTTTTACAACTTTATATATTTGGAGAAAGGCTTTAGATATAAAGTACGCTATATATAAAGGAGCTCTTATTA TTAAAAAGAAGGATTTTAACGATGAATATCATTTTATGCAACCTTTAGGATATAAGAAAGAAAATTTAAAGGATATAATA GAAACTTTAATGGGGTATAAAAAAGAAAAATGCATTAAATATCTCTTTAAAGATTTAAGATATGATTTTGTTAAAGAGTT AAAAAATCTATACAAAGATGAAGAAATTTATAGTAATATAATGGTAGAAGAGGATAGGGATAACTTTGATTATTTATATG AGAGTAAAAAACTTATAACTTTGTCAGGTAAAAAACTTCATGGCAAAAAGAATCACTATAACTATTTTATAAAAAATTAT AACTATGATATAAGGGATTTTACAGAAGAAGGAGTTATAGAAGATAGCTTAAGAATTGCTGAGTTATGGTATGAAAAAAA TGATACAAAGGATAAGCATTTACTTTATGAGCTTCAAAGCATAAGAGATATGTGTTATAACATGGATGTTTTAGGATTAG AAGGCATGGGATTATATATAGACGGGGAAATTGCAGGCTTTAGTATAGGAGAAAAATTTAGTGATAATATGGCTATTGTG CACATAGAAAAAGCTAATAAGGATCTTAGAGGAGCTTATACCTTTGTAAATAAAGCTTTCGTTGAAAATTATTTTAGTGA TATACCTATAATAAATAGGGAACAAGATTTAGGCATAGAAGGACTAAGAAAAGCTAAATTATCCTATTCACCCCTAGATT TTGAAAAAAAATATATGGTGGATATATGTTATAACTGCGGATGTAGTGATAGGGAAGAAAGACAAAGACAGATTATATAA
Upstream 100 bases:
>100_bases CTCTTCTTAATCAATAATCAATATTTGAAGGGTTATTTTTTTAATATTAAAGTAGAGTAAGTTACTAGGAAATAAATATA TTATTAAAAGAGGGGATAAT
Downstream 100 bases:
>100_bases AAAATACTACAGTTATTTCGATTATAGGTAGTGTATATAAAAGATTTAAAAGAAAACTATGCATTAGGTAATTTATAAAA TATTAAGGAAAGGAATGAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 319; Mature: 319
Protein sequence:
>319_residues MLNFKRLTINDKKLFESYIKPYNFLNCEYSFTTLYIWRKALDIKYAIYKGALIIKKKDFNDEYHFMQPLGYKKENLKDII ETLMGYKKEKCIKYLFKDLRYDFVKELKNLYKDEEIYSNIMVEEDRDNFDYLYESKKLITLSGKKLHGKKNHYNYFIKNY NYDIRDFTEEGVIEDSLRIAELWYEKNDTKDKHLLYELQSIRDMCYNMDVLGLEGMGLYIDGEIAGFSIGEKFSDNMAIV HIEKANKDLRGAYTFVNKAFVENYFSDIPIINREQDLGIEGLRKAKLSYSPLDFEKKYMVDICYNCGCSDREERQRQII
Sequences:
>Translated_319_residues MLNFKRLTINDKKLFESYIKPYNFLNCEYSFTTLYIWRKALDIKYAIYKGALIIKKKDFNDEYHFMQPLGYKKENLKDII ETLMGYKKEKCIKYLFKDLRYDFVKELKNLYKDEEIYSNIMVEEDRDNFDYLYESKKLITLSGKKLHGKKNHYNYFIKNY NYDIRDFTEEGVIEDSLRIAELWYEKNDTKDKHLLYELQSIRDMCYNMDVLGLEGMGLYIDGEIAGFSIGEKFSDNMAIV HIEKANKDLRGAYTFVNKAFVENYFSDIPIINREQDLGIEGLRKAKLSYSPLDFEKKYMVDICYNCGCSDREERQRQII >Mature_319_residues MLNFKRLTINDKKLFESYIKPYNFLNCEYSFTTLYIWRKALDIKYAIYKGALIIKKKDFNDEYHFMQPLGYKKENLKDII ETLMGYKKEKCIKYLFKDLRYDFVKELKNLYKDEEIYSNIMVEEDRDNFDYLYESKKLITLSGKKLHGKKNHYNYFIKNY NYDIRDFTEEGVIEDSLRIAELWYEKNDTKDKHLLYELQSIRDMCYNMDVLGLEGMGLYIDGEIAGFSIGEKFSDNMAIV HIEKANKDLRGAYTFVNKAFVENYFSDIPIINREQDLGIEGLRKAKLSYSPLDFEKKYMVDICYNCGCSDREERQRQII
Specific function: Unknown
COG id: COG4866
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016181 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38269; Mature: 38269
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNFKRLTINDKKLFESYIKPYNFLNCEYSFTTLYIWRKALDIKYAIYKGALIIKKKDFN CCCEEEEEECHHHHHHHHCCCCCEEECEEEHHHEEEEHHHHHEEEEEECCEEEEEECCCC DEYHFMQPLGYKKENLKDIIETLMGYKKEKCIKYLFKDLRYDFVKELKNLYKDEEIYSNI CCHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC MVEEDRDNFDYLYESKKLITLSGKKLHGKKNHYNYFIKNYNYDIRDFTEEGVIEDSLRIA EEECCCCCCHHHCCCCEEEEEECCEECCCCCCCEEEEECCCCCHHHHCCCCCHHHHHHHH ELWYEKNDTKDKHLLYELQSIRDMCYNMDVLGLEGMGLYIDGEIAGFSIGEKFSDNMAIV HHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECEEECCCCCCCCCCCEEEE HIEKANKDLRGAYTFVNKAFVENYFSDIPIINREQDLGIEGLRKAKLSYSPLDFEKKYMV EEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHH DICYNCGCSDREERQRQII HHHHCCCCCCHHHHHHCCC >Mature Secondary Structure MLNFKRLTINDKKLFESYIKPYNFLNCEYSFTTLYIWRKALDIKYAIYKGALIIKKKDFN CCCEEEEEECHHHHHHHHCCCCCEEECEEEHHHEEEEHHHHHEEEEEECCEEEEEECCCC DEYHFMQPLGYKKENLKDIIETLMGYKKEKCIKYLFKDLRYDFVKELKNLYKDEEIYSNI CCHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC MVEEDRDNFDYLYESKKLITLSGKKLHGKKNHYNYFIKNYNYDIRDFTEEGVIEDSLRIA EEECCCCCCHHHCCCCEEEEEECCEECCCCCCCEEEEECCCCCHHHHCCCCCHHHHHHHH ELWYEKNDTKDKHLLYELQSIRDMCYNMDVLGLEGMGLYIDGEIAGFSIGEKFSDNMAIV HHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECEEECCCCCCCCCCCEEEE HIEKANKDLRGAYTFVNKAFVENYFSDIPIINREQDLGIEGLRKAKLSYSPLDFEKKYMV EEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHH DICYNCGCSDREERQRQII HHHHCCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12949158; 1386735 [H]