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The map label for this gene is psd

Identifier: 170755106

GI number: 170755106

Start: 30691

End: 31578

Strand: Reverse

Name: psd

Synonym: CLD_0794

Alternate gene names: 170755106

Gene position: 31578-30691 (Counterclockwise)

Preceding gene: 170754592

Following gene: 170757058

Centisome position: 0.8

GC content: 24.32

Gene sequence:

>888_bases
ATGATAAAATATTATAATAGAAAAAATAAAGATTATAATATAGAAAAAGTTGCTGGAGAAAAATATTTAAGTTGGACTTA
TTCCTCACCTATTGGTATGAATCTTTTAGAAGCATTTATAAAAAAGAAATTTTTTTCAAAAATATATGGATTTTATTGTG
ATAGAAGGCTAAGTCGCAAGAAAATAAATAAATTTATTAATGATTTTCAAATTGACATGTCTTTAAGTGAAAATCAATCA
AGTAATTTTAAGTGTTTTAATGATTTTTTTACTAGAAAATTAAAAAAAGAAGCTAGACCTATAAAAACTGATAAAAATTT
ATTAATATCCCCAGGTGATGGTAAAATACTTGCATATGAAAATCTAGATCTGAATTCAATAACTGAAGTAAAAGGAATCA
ATTATAGTTTTTATGAATTAATAAATAATGATTCATTGGCAAAAGAATATAACAATGGAACTTGCTTAGTTTTAAGACTT
TGCCCCACAGATTACCATAGATTTCATTTTATAGACAATGGTATCTGTGAAAACACTATAAAACTAAAGGGTTTCTACTA
TTCAGTAAATCCAATTGCATTATCTAAAATTCCTAGTGTGTTTTGCAAAAATAAAAGAGAGTATTCCATTTTTCATAGTG
AAAATTTCGATGATATAATATTTATGGAAGTTGGAGCTACATGTGTGGGTTCTATAGTACAGACTTATAAGCCCAATACT
AAAATTTTAAAAGGTGATGAAAAAGGTTATTTTAAATTTGGAGGATCCACAGTAATTTTATTCTTCAAAGAAAATACTAT
AAAAATTGATAATGATATATTAAATCAAAGTAAATTAGGATATGAAACATCTGTTGTAATGGGTGAATCTATTGGAATAA
AAAAATAA

Upstream 100 bases:

>100_bases
TATTTATAGATATTTCTGTTATTTTTATTAATTTGTTGACATTTATAAATAATTAAATAATAATTAGCTTATCTTATTTT
ACTTAGAAAGAGGTTGTTTA

Downstream 100 bases:

>100_bases
AAAAAGTTTGTCATTTTAGCCATTATTATTTCTGAACACGGAGCAAAATTTATTTTTTTAGCCAAAAAGATATAGCACTA
ATTTTTAGTGCTACATCTCC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MIKYYNRKNKDYNIEKVAGEKYLSWTYSSPIGMNLLEAFIKKKFFSKIYGFYCDRRLSRKKINKFINDFQIDMSLSENQS
SNFKCFNDFFTRKLKKEARPIKTDKNLLISPGDGKILAYENLDLNSITEVKGINYSFYELINNDSLAKEYNNGTCLVLRL
CPTDYHRFHFIDNGICENTIKLKGFYYSVNPIALSKIPSVFCKNKREYSIFHSENFDDIIFMEVGATCVGSIVQTYKPNT
KILKGDEKGYFKFGGSTVILFFKENTIKIDNDILNQSKLGYETSVVMGESIGIKK

Sequences:

>Translated_295_residues
MIKYYNRKNKDYNIEKVAGEKYLSWTYSSPIGMNLLEAFIKKKFFSKIYGFYCDRRLSRKKINKFINDFQIDMSLSENQS
SNFKCFNDFFTRKLKKEARPIKTDKNLLISPGDGKILAYENLDLNSITEVKGINYSFYELINNDSLAKEYNNGTCLVLRL
CPTDYHRFHFIDNGICENTIKLKGFYYSVNPIALSKIPSVFCKNKREYSIFHSENFDDIIFMEVGATCVGSIVQTYKPNT
KILKGDEKGYFKFGGSTVILFFKENTIKIDNDILNQSKLGYETSVVMGESIGIKK
>Mature_295_residues
MIKYYNRKNKDYNIEKVAGEKYLSWTYSSPIGMNLLEAFIKKKFFSKIYGFYCDRRLSRKKINKFINDFQIDMSLSENQS
SNFKCFNDFFTRKLKKEARPIKTDKNLLISPGDGKILAYENLDLNSITEVKGINYSFYELINNDSLAKEYNNGTCLVLRL
CPTDYHRFHFIDNGICENTIKLKGFYYSVNPIALSKIPSVFCKNKREYSIFHSENFDDIIFMEVGATCVGSIVQTYKPNT
KILKGDEKGYFKFGGSTVILFFKENTIKIDNDILNQSKLGYETSVVMGESIGIKK

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 2 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=316, Percent_Identity=24.3670886075949, Blast_Score=75, Evalue=7e-14,
Organism=Escherichia coli, GI1790604, Length=279, Percent_Identity=31.5412186379928, Blast_Score=137, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI71980843, Length=209, Percent_Identity=29.6650717703349, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71980840, Length=209, Percent_Identity=29.6650717703349, Blast_Score=89, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6321609, Length=242, Percent_Identity=37.603305785124, Blast_Score=146, Evalue=4e-36,
Organism=Drosophila melanogaster, GI24649526, Length=316, Percent_Identity=25.9493670886076, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24649528, Length=316, Percent_Identity=25.9493670886076, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24649524, Length=316, Percent_Identity=25.9493670886076, Blast_Score=79, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 34201; Mature: 34201

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKYYNRKNKDYNIEKVAGEKYLSWTYSSPIGMNLLEAFIKKKFFSKIYGFYCDRRLSRK
CCCCCCCCCCCCCCEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KINKFINDFQIDMSLSENQSSNFKCFNDFFTRKLKKEARPIKTDKNLLISPGDGKILAYE
HHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEE
NLDLNSITEVKGINYSFYELINNDSLAKEYNNGTCLVLRLCPTDYHRFHFIDNGICENTI
CCCCCCHHHHCCCCCHHHHHHCCCHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCEE
KLKGFYYSVNPIALSKIPSVFCKNKREYSIFHSENFDDIIFMEVGATCVGSIVQTYKPNT
EEEEEEEEECCEEHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHCCCCC
KILKGDEKGYFKFGGSTVILFFKENTIKIDNDILNQSKLGYETSVVMGESIGIKK
EEEECCCCCEEEECCCEEEEEEECCEEEECHHHHCCHHCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MIKYYNRKNKDYNIEKVAGEKYLSWTYSSPIGMNLLEAFIKKKFFSKIYGFYCDRRLSRK
CCCCCCCCCCCCCCEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KINKFINDFQIDMSLSENQSSNFKCFNDFFTRKLKKEARPIKTDKNLLISPGDGKILAYE
HHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEE
NLDLNSITEVKGINYSFYELINNDSLAKEYNNGTCLVLRLCPTDYHRFHFIDNGICENTI
CCCCCCHHHHCCCCCHHHHHHCCCHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCEE
KLKGFYYSVNPIALSKIPSVFCKNKREYSIFHSENFDDIIFMEVGATCVGSIVQTYKPNT
EEEEEEEEECCEEHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHCCCCC
KILKGDEKGYFKFGGSTVILFFKENTIKIDNDILNQSKLGYETSVVMGESIGIKK
EEEECCCCCEEEECCCEEEEEEECCEEEECHHHHCCHHCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA