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The map label for this gene is yhdW [H]

Identifier: 170755079

GI number: 170755079

Start: 1316344

End: 1318230

Strand: Direct

Name: yhdW [H]

Synonym: CLD_3377

Alternate gene names: 170755079

Gene position: 1316344-1318230 (Clockwise)

Preceding gene: 170755887

Following gene: 170757503

Centisome position: 33.26

GC content: 31.05

Gene sequence:

>1887_bases
ATGACAACGAGAATGGAGACAAGGCATAGTAAACCCATATCCACATTAAAGATGATAAGAAAAAATTTCACCTATTTTAG
AAAGAGTTTTTTTATAAATATTGGATTTGAATCGATATACAAAGTGTTGACAAGCTTTATATTTCTGCCATTTATTACAA
TGGTGCTAAATTATTTTATGCACCTAAGAGGGATGAAGATGATGGCAAATAACCAAATATTAACTTTTGCAAGAAGTATT
CCAGGAATTTTGACAATTTTAATTTTGGGAATTCTTAGCTTTCTCTTTATTTTTATAGAATATGCAGGACTTATTGTAAT
ATCACAGGAAACATATTTTGATAAAAAGATTTCAGCAAAAGCATCTTTTTTTGCAGCAATGAAAAGTATTAGAGGTATTA
TAAAAATAGGCTCTATTCCAATTATAATATATGTTCTTTTTATTATTCCTTTTGTAGCTAGTTCAATGGGGTTGTCTTCA
AGTTTACTTCCGAAGATTGAAATACCAGCCTTTATTATGGATGTAGTATACAAAACACCAAAATGGATAGGTTTATATGC
AATTGTATTTTTTGTACTATTCTATTTTTTAATTAGATGGATTTTCTCATTGCACGTTGTAGTATTGGAAGGAAGGGATT
TTTTAAGTGCATTAAAGAGAAGTTCACAGCTTGTAAAAGGATCTTTTCTTAAAATTTGGACTACTATGCTTTTGTGGAAC
TTAAGTATTTTTGCTATTGTAGCGGTAGTGGTGATTTTAGTGGGAATTGGTATGGTGCTTTTAAATGAAGTACTAAAAGG
AAATGTAAAACTATTTGTAACTATTCTTTCCTTTGTTACAACAATGGGTGGAATATTAGTCATGATAGCCACTCTATTTA
TTTCTCCACTTACTATTATGTTGATTACTCAATTGTATTATAGACAGGCTAAAATGAAAGATGGTGTAGAACCAACCCCT
ATGATTATTACAGTAACACCAAGCAAAATAAACTGGCAAAATTTATTTAATCGACATAAGAAAAAACTAATAGTAGTTAG
TGTGCTAGGAATAATGATATTTACATGGCTTTCCTATGTTTATTTTATTACTTATGAATTCGATGCTAATAACAACTTGG
TTACTGTTACCGCTCATAGGGGAGATGCTGTTAATGCACCAGATAACACTATGAGTTCACTTTTAGGTGCTATTGCCAAC
AAAGCAGATTATAGTGAGCTGGACGTACAGCAAACAAAGGATGGAATGGTAGTTTTAACCCACGATACCAATTTAAAGAA
CAATACAGGGGTAAACAAAAATATTTGGGAATTGACCTTTGATGAAGTAGAAAAATTAGATGTGGGAAGTCATTTTTCAC
CTAAGTTTGCTGGCGAGAAAATTCCGACTTTGGACAGCATTATGAAAGCAGCCAATAAAAAGATAAAGCTAAATATAGAG
ATTAAACTGAATGGACATGATCAAAAGCTAGAAGAAAGGGTGGCAAAGCTTATAAGGGACAATAATTTTGTAGATCAATG
CGTAGTTACGTCCTTAGATTATAATGCTTTGCAAAAGGTAAAAAAATTAAATCCTAAAATCAAGGTGGGATATATTGTAT
TTGCAGGTATGGGAGATGTTACTGCATTGAATGTTGACTTTTTAAGTGTAGAAGAAGCCGTTGCAACGCCAGAATTTATT
GAGAAAGTGCATAAAAATAATAAGAGGATTCATGTTTGGACAATAAATGATCCCGAAAAAATGGAAAAGTTTATAGATTT
ACAAGTAGATAGTATTATTACAGATGACTCCAAAGAAGTAACAAGGTTAATTCGGGAGAAAAAAGATAAGCAGCTTAGAA
ATGAAATAGATTATATTTACAAGATTGTAGCGTTATTTAATAACTAG

Upstream 100 bases:

>100_bases
GTTTTTTGCATGGAAATTGAAATGATCACATTATGTGTGTTAATTTTAGCAGTATTTATTGTAGCTGAATTGAAAAAGAA
AATGTAAAGGGGACAGATCA

Downstream 100 bases:

>100_bases
ATAAAGCTTTAAATGAGAAATTTCCCATATAATTCGGTTTGAAATTCACCATGATGGTATAAGATTTAAATTCTAAAATA
TATAACAGATTTAGATTAAT

Product: glycerophosphoryl diester phosphodiesterase family protein

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 628; Mature: 627

Protein sequence:

>628_residues
MTTRMETRHSKPISTLKMIRKNFTYFRKSFFINIGFESIYKVLTSFIFLPFITMVLNYFMHLRGMKMMANNQILTFARSI
PGILTILILGILSFLFIFIEYAGLIVISQETYFDKKISAKASFFAAMKSIRGIIKIGSIPIIIYVLFIIPFVASSMGLSS
SLLPKIEIPAFIMDVVYKTPKWIGLYAIVFFVLFYFLIRWIFSLHVVVLEGRDFLSALKRSSQLVKGSFLKIWTTMLLWN
LSIFAIVAVVVILVGIGMVLLNEVLKGNVKLFVTILSFVTTMGGILVMIATLFISPLTIMLITQLYYRQAKMKDGVEPTP
MIITVTPSKINWQNLFNRHKKKLIVVSVLGIMIFTWLSYVYFITYEFDANNNLVTVTAHRGDAVNAPDNTMSSLLGAIAN
KADYSELDVQQTKDGMVVLTHDTNLKNNTGVNKNIWELTFDEVEKLDVGSHFSPKFAGEKIPTLDSIMKAANKKIKLNIE
IKLNGHDQKLEERVAKLIRDNNFVDQCVVTSLDYNALQKVKKLNPKIKVGYIVFAGMGDVTALNVDFLSVEEAVATPEFI
EKVHKNNKRIHVWTINDPEKMEKFIDLQVDSIITDDSKEVTRLIREKKDKQLRNEIDYIYKIVALFNN

Sequences:

>Translated_628_residues
MTTRMETRHSKPISTLKMIRKNFTYFRKSFFINIGFESIYKVLTSFIFLPFITMVLNYFMHLRGMKMMANNQILTFARSI
PGILTILILGILSFLFIFIEYAGLIVISQETYFDKKISAKASFFAAMKSIRGIIKIGSIPIIIYVLFIIPFVASSMGLSS
SLLPKIEIPAFIMDVVYKTPKWIGLYAIVFFVLFYFLIRWIFSLHVVVLEGRDFLSALKRSSQLVKGSFLKIWTTMLLWN
LSIFAIVAVVVILVGIGMVLLNEVLKGNVKLFVTILSFVTTMGGILVMIATLFISPLTIMLITQLYYRQAKMKDGVEPTP
MIITVTPSKINWQNLFNRHKKKLIVVSVLGIMIFTWLSYVYFITYEFDANNNLVTVTAHRGDAVNAPDNTMSSLLGAIAN
KADYSELDVQQTKDGMVVLTHDTNLKNNTGVNKNIWELTFDEVEKLDVGSHFSPKFAGEKIPTLDSIMKAANKKIKLNIE
IKLNGHDQKLEERVAKLIRDNNFVDQCVVTSLDYNALQKVKKLNPKIKVGYIVFAGMGDVTALNVDFLSVEEAVATPEFI
EKVHKNNKRIHVWTINDPEKMEKFIDLQVDSIITDDSKEVTRLIREKKDKQLRNEIDYIYKIVALFNN
>Mature_627_residues
TTRMETRHSKPISTLKMIRKNFTYFRKSFFINIGFESIYKVLTSFIFLPFITMVLNYFMHLRGMKMMANNQILTFARSIP
GILTILILGILSFLFIFIEYAGLIVISQETYFDKKISAKASFFAAMKSIRGIIKIGSIPIIIYVLFIIPFVASSMGLSSS
LLPKIEIPAFIMDVVYKTPKWIGLYAIVFFVLFYFLIRWIFSLHVVVLEGRDFLSALKRSSQLVKGSFLKIWTTMLLWNL
SIFAIVAVVVILVGIGMVLLNEVLKGNVKLFVTILSFVTTMGGILVMIATLFISPLTIMLITQLYYRQAKMKDGVEPTPM
IITVTPSKINWQNLFNRHKKKLIVVSVLGIMIFTWLSYVYFITYEFDANNNLVTVTAHRGDAVNAPDNTMSSLLGAIANK
ADYSELDVQQTKDGMVVLTHDTNLKNNTGVNKNIWELTFDEVEKLDVGSHFSPKFAGEKIPTLDSIMKAANKKIKLNIEI
KLNGHDQKLEERVAKLIRDNNFVDQCVVTSLDYNALQKVKKLNPKIKVGYIVFAGMGDVTALNVDFLSVEEAVATPEFIE
KVHKNNKRIHVWTINDPEKMEKFIDLQVDSIITDDSKEVTRLIREKKDKQLRNEIDYIYKIVALFNN

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI146198640, Length=171, Percent_Identity=27.4853801169591, Blast_Score=80, Evalue=8e-15,
Organism=Homo sapiens, GI7706617, Length=129, Percent_Identity=31.7829457364341, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI260763878, Length=158, Percent_Identity=34.1772151898734, Blast_Score=75, Evalue=3e-13,
Organism=Homo sapiens, GI260763876, Length=260, Percent_Identity=25, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI260763880, Length=158, Percent_Identity=34.1772151898734, Blast_Score=74, Evalue=3e-13,
Organism=Escherichia coli, GI1789858, Length=231, Percent_Identity=25.1082251082251, Blast_Score=73, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17542344, Length=166, Percent_Identity=28.3132530120482, Blast_Score=73, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 71628; Mature: 71497

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTRMETRHSKPISTLKMIRKNFTYFRKSFFINIGFESIYKVLTSFIFLPFITMVLNYFM
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
HLRGMKMMANNQILTFARSIPGILTILILGILSFLFIFIEYAGLIVISQETYFDKKISAK
HHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHH
ASFFAAMKSIRGIIKIGSIPIIIYVLFIIPFVASSMGLSSSLLPKIEIPAFIMDVVYKTP
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC
KWIGLYAIVFFVLFYFLIRWIFSLHVVVLEGRDFLSALKRSSQLVKGSFLKIWTTMLLWN
CHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSIFAIVAVVVILVGIGMVLLNEVLKGNVKLFVTILSFVTTMGGILVMIATLFISPLTIM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LITQLYYRQAKMKDGVEPTPMIITVTPSKINWQNLFNRHKKKLIVVSVLGIMIFTWLSYV
HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFITYEFDANNNLVTVTAHRGDAVNAPDNTMSSLLGAIANKADYSELDVQQTKDGMVVLT
EEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCHHCCHHHCCCCEEEEE
HDTNLKNNTGVNKNIWELTFDEVEKLDVGSHFSPKFAGEKIPTLDSIMKAANKKIKLNIE
ECCCCCCCCCCCCCHHHEEHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEE
IKLNGHDQKLEERVAKLIRDNNFVDQCVVTSLDYNALQKVKKLNPKIKVGYIVFAGMGDV
EEECCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEEECCCCE
TALNVDFLSVEEAVATPEFIEKVHKNNKRIHVWTINDPEKMEKFIDLQVDSIITDDSKEV
EEEEEEHHHHHHHHCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHH
TRLIREKKDKQLRNEIDYIYKIVALFNN
HHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTRMETRHSKPISTLKMIRKNFTYFRKSFFINIGFESIYKVLTSFIFLPFITMVLNYFM
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHH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HHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]