Definition Clostridium botulinum B1 str. Okra, complete genome.
Accession NC_010516
Length 3,958,233

Click here to switch to the map view.

The map label for this gene is 170754791

Identifier: 170754791

GI number: 170754791

Start: 862760

End: 863194

Strand: Direct

Name: 170754791

Synonym: CLD_0022

Alternate gene names: NA

Gene position: 862760-863194 (Clockwise)

Preceding gene: 170755675

Following gene: 170757311

Centisome position: 21.8

GC content: 26.21

Gene sequence:

>435_bases
GTGGGTGATACTATTGACCTTATCAAAATCAAAGGGTTACCTGTAAGACTCCTTTCTAATGGATATTTACTAGGTAGAGA
TGAATATATAAAAATTGCTAATAAATGTGATGAGATTTTTGGAGAGATAAAAGTAATAACAGAAGAAGATTTTCAAAAAA
TCCAAAGACCAATTGAAGGGTATACATTAGCAGAATATATTTCAAACATGGCTTCTTTTAATAAACAATACAAAGGAAAA
TTTATATTTGAAATTACTATCATTAAGGGATATAACGATGATGAAGAATCAATTAAGAAGATAAAAAATATTATCAAGGA
AATATCTCCTAATAAGATTATTATTGCAAGAATAGAAGATGAAAGATTTAAGAAAAAACTTGGTATAACTGATGAAAGAT
TTGAGGAAATTTCAAATGTATTACTAAGTAGTTAG

Upstream 100 bases:

>100_bases
AGATGTGGATAGCGACAAAATTTGCGAGTATAGTGCAAAATACTTTGCTACTAAGGCAATAAAATAAATTTAGCTTTATT
GATTTTACATAAATGATAGA

Downstream 100 bases:

>100_bases
TAATGCTAATACATAATATGAAATAAAGGCGACGTAATTAATGTAATTTAGAGTACGAATAATGTCCTTTGAAAATTGAA
TAATACGGTGTTAGGAAGTA

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: Radical SAM Domain Protein; Radical Sam Domain Protein

Number of amino acids: Translated: 144; Mature: 143

Protein sequence:

>144_residues
MGDTIDLIKIKGLPVRLLSNGYLLGRDEYIKIANKCDEIFGEIKVITEEDFQKIQRPIEGYTLAEYISNMASFNKQYKGK
FIFEITIIKGYNDDEESIKKIKNIIKEISPNKIIIARIEDERFKKKLGITDERFEEISNVLLSS

Sequences:

>Translated_144_residues
MGDTIDLIKIKGLPVRLLSNGYLLGRDEYIKIANKCDEIFGEIKVITEEDFQKIQRPIEGYTLAEYISNMASFNKQYKGK
FIFEITIIKGYNDDEESIKKIKNIIKEISPNKIIIARIEDERFKKKLGITDERFEEISNVLLSS
>Mature_143_residues
GDTIDLIKIKGLPVRLLSNGYLLGRDEYIKIANKCDEIFGEIKVITEEDFQKIQRPIEGYTLAEYISNMASFNKQYKGKF
IFEITIIKGYNDDEESIKKIKNIIKEISPNKIIIARIEDERFKKKLGITDERFEEISNVLLSS

Specific function: Unknown

COG id: COG0731

COG function: function code C; Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16699; Mature: 16567

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDTIDLIKIKGLPVRLLSNGYLLGRDEYIKIANKCDEIFGEIKVITEEDFQKIQRPIEG
CCCCEEEEEECCCCEEEECCCEEECCHHHHHHHHHHHHHHHHEEEECHHHHHHHHHCCCC
YTLAEYISNMASFNKQYKGKFIFEITIIKGYNDDEESIKKIKNIIKEISPNKIIIARIED
CHHHHHHHHHHHHCHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECH
ERFKKKLGITDERFEEISNVLLSS
HHHHHHCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
GDTIDLIKIKGLPVRLLSNGYLLGRDEYIKIANKCDEIFGEIKVITEEDFQKIQRPIEG
CCCEEEEEECCCCEEEECCCEEECCHHHHHHHHHHHHHHHHEEEECHHHHHHHHHCCCC
YTLAEYISNMASFNKQYKGKFIFEITIIKGYNDDEESIKKIKNIIKEISPNKIIIARIED
CHHHHHHHHHHHHCHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECH
ERFKKKLGITDERFEEISNVLLSS
HHHHHHCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA