| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170754791
Identifier: 170754791
GI number: 170754791
Start: 862760
End: 863194
Strand: Direct
Name: 170754791
Synonym: CLD_0022
Alternate gene names: NA
Gene position: 862760-863194 (Clockwise)
Preceding gene: 170755675
Following gene: 170757311
Centisome position: 21.8
GC content: 26.21
Gene sequence:
>435_bases GTGGGTGATACTATTGACCTTATCAAAATCAAAGGGTTACCTGTAAGACTCCTTTCTAATGGATATTTACTAGGTAGAGA TGAATATATAAAAATTGCTAATAAATGTGATGAGATTTTTGGAGAGATAAAAGTAATAACAGAAGAAGATTTTCAAAAAA TCCAAAGACCAATTGAAGGGTATACATTAGCAGAATATATTTCAAACATGGCTTCTTTTAATAAACAATACAAAGGAAAA TTTATATTTGAAATTACTATCATTAAGGGATATAACGATGATGAAGAATCAATTAAGAAGATAAAAAATATTATCAAGGA AATATCTCCTAATAAGATTATTATTGCAAGAATAGAAGATGAAAGATTTAAGAAAAAACTTGGTATAACTGATGAAAGAT TTGAGGAAATTTCAAATGTATTACTAAGTAGTTAG
Upstream 100 bases:
>100_bases AGATGTGGATAGCGACAAAATTTGCGAGTATAGTGCAAAATACTTTGCTACTAAGGCAATAAAATAAATTTAGCTTTATT GATTTTACATAAATGATAGA
Downstream 100 bases:
>100_bases TAATGCTAATACATAATATGAAATAAAGGCGACGTAATTAATGTAATTTAGAGTACGAATAATGTCCTTTGAAAATTGAA TAATACGGTGTTAGGAAGTA
Product: radical SAM domain-containing protein
Products: NA
Alternate protein names: Radical SAM Domain Protein; Radical Sam Domain Protein
Number of amino acids: Translated: 144; Mature: 143
Protein sequence:
>144_residues MGDTIDLIKIKGLPVRLLSNGYLLGRDEYIKIANKCDEIFGEIKVITEEDFQKIQRPIEGYTLAEYISNMASFNKQYKGK FIFEITIIKGYNDDEESIKKIKNIIKEISPNKIIIARIEDERFKKKLGITDERFEEISNVLLSS
Sequences:
>Translated_144_residues MGDTIDLIKIKGLPVRLLSNGYLLGRDEYIKIANKCDEIFGEIKVITEEDFQKIQRPIEGYTLAEYISNMASFNKQYKGK FIFEITIIKGYNDDEESIKKIKNIIKEISPNKIIIARIEDERFKKKLGITDERFEEISNVLLSS >Mature_143_residues GDTIDLIKIKGLPVRLLSNGYLLGRDEYIKIANKCDEIFGEIKVITEEDFQKIQRPIEGYTLAEYISNMASFNKQYKGKF IFEITIIKGYNDDEESIKKIKNIIKEISPNKIIIARIEDERFKKKLGITDERFEEISNVLLSS
Specific function: Unknown
COG id: COG0731
COG function: function code C; Fe-S oxidoreductases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16699; Mature: 16567
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGDTIDLIKIKGLPVRLLSNGYLLGRDEYIKIANKCDEIFGEIKVITEEDFQKIQRPIEG CCCCEEEEEECCCCEEEECCCEEECCHHHHHHHHHHHHHHHHEEEECHHHHHHHHHCCCC YTLAEYISNMASFNKQYKGKFIFEITIIKGYNDDEESIKKIKNIIKEISPNKIIIARIED CHHHHHHHHHHHHCHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECH ERFKKKLGITDERFEEISNVLLSS HHHHHHCCCCHHHHHHHHHHHHCC >Mature Secondary Structure GDTIDLIKIKGLPVRLLSNGYLLGRDEYIKIANKCDEIFGEIKVITEEDFQKIQRPIEG CCCEEEEEECCCCEEEECCCEEECCHHHHHHHHHHHHHHHHEEEECHHHHHHHHHCCCC YTLAEYISNMASFNKQYKGKFIFEITIIKGYNDDEESIKKIKNIIKEISPNKIIIARIED CHHHHHHHHHHHHCHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECH ERFKKKLGITDERFEEISNVLLSS HHHHHHCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA