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The map label for this gene is rbfA

Identifier: 170754753

GI number: 170754753

Start: 2536322

End: 2536684

Strand: Reverse

Name: rbfA

Synonym: CLD_2223

Alternate gene names: 170754753

Gene position: 2536684-2536322 (Counterclockwise)

Preceding gene: 170756036

Following gene: 170756269

Centisome position: 64.09

GC content: 28.65

Gene sequence:

>363_bases
ATGGCAAAATATAGAGCAGGAAGAATAAATGAAGAAGTAAAAAAAGAAGTGAGTAATATTATTCATAATGATATAAAAGA
TCCAAGACTAAGTGCCATGGTGAGTGTAACGGATGTAGATGTTACAAAAGATTTGAAATATGCAAAGGTATATGTAAGTA
TTTTTGGAAATGAAAAAGCAAAAGAAGAATCTCTACAGGCTTTAAAAAGTTCTGTAGGTTTCATAAGAAAAGAAATTGGA
AGAAGAGTTAAATTAAGAAATACACCAGAGGTTATAATAGAAGTAGATAATAGTATTGAAAGAGGTATGCATATAGATGA
ACTTCTTCATTCAATAAAGGAGAATGAGTCAAATGATAACTAA

Upstream 100 bases:

>100_bases
TAATGACATAAAAGAGGGCGACATAATTGAATGCTTTATCATGGAAGAGATTAAAAAGAAAACACTATAAAGTTCTCTTC
TAAAAAAAGGAGTGGTTTTC

Downstream 100 bases:

>100_bases
TGATATACTAGATAAAATAAAGGAAAGTAATAGCATAGCTATTACTTTCCATACTTCTCCTGATGGAGATTCCTTAGGCA
GTGCTTTAGGATTACTTCAA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MAKYRAGRINEEVKKEVSNIIHNDIKDPRLSAMVSVTDVDVTKDLKYAKVYVSIFGNEKAKEESLQALKSSVGFIRKEIG
RRVKLRNTPEVIIEVDNSIERGMHIDELLHSIKENESNDN

Sequences:

>Translated_120_residues
MAKYRAGRINEEVKKEVSNIIHNDIKDPRLSAMVSVTDVDVTKDLKYAKVYVSIFGNEKAKEESLQALKSSVGFIRKEIG
RRVKLRNTPEVIIEVDNSIERGMHIDELLHSIKENESNDN
>Mature_119_residues
AKYRAGRINEEVKKEVSNIIHNDIKDPRLSAMVSVTDVDVTKDLKYAKVYVSIFGNEKAKEESLQALKSSVGFIRKEIGR
RVKLRNTPEVIIEVDNSIERGMHIDELLHSIKENESNDN

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=110, Percent_Identity=39.0909090909091, Blast_Score=91, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13697; Mature: 13566

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKYRAGRINEEVKKEVSNIIHNDIKDPRLSAMVSVTDVDVTKDLKYAKVYVSIFGNEKA
CCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCH
KEESLQALKSSVGFIRKEIGRRVKLRNTPEVIIEVDNSIERGMHIDELLHSIKENESNDN
HHHHHHHHHHHHHHHHHHHCCEECCCCCCEEEEEECCHHHHCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AKYRAGRINEEVKKEVSNIIHNDIKDPRLSAMVSVTDVDVTKDLKYAKVYVSIFGNEKA
CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCH
KEESLQALKSSVGFIRKEIGRRVKLRNTPEVIIEVDNSIERGMHIDELLHSIKENESNDN
HHHHHHHHHHHHHHHHHHHCCEECCCCCCEEEEEECCHHHHCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA