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The map label for this gene is ydeE [H]

Identifier: 170754575

GI number: 170754575

Start: 891677

End: 892534

Strand: Direct

Name: ydeE [H]

Synonym: CLD_3790

Alternate gene names: 170754575

Gene position: 891677-892534 (Clockwise)

Preceding gene: 170755691

Following gene: 170756228

Centisome position: 22.53

GC content: 36.48

Gene sequence:

>858_bases
ATGAAGTGGATTGAAGGAATCGGTGAAGCTATCAACTATATTGAGGAGAATATCACTGAAGAAATACCAATAGAAAATAT
TGCAAAAAAAGCATTTGTGTCGACCTTCTATTTCCAAAAAGGCTTTGCAATGCTTTGTGGTCTTACGGTTGGAGAGTACA
TCAGACAACGCAGGCTTACCCTTGCCGGCAGTGAGCTTGTTTCCACTGATGAAAAAATCATTGATATTGCACTAAAATAT
GGTTACAACTCACCAGATAGTTTCACAAAAGCTTTTACTCGATTTCATAGTGTCACACCTACTGCTGTTCGAAAAGATGG
AGCAATGATTAAATCCTTTGCTCCACTGAAAATCAAATTTTTATTGGAAGGCGGTTATATTATGGATTACAAAATTGTTG
AAAAAGATTCGTTTACTGTCATGGGCGTATCAAAGGTGTTTAAATATGATAGTGCAACTACAAAAGTTCCAGAGTTTTGG
ACAGAGCATTATGAAACAGGAAAGGGAAAATATGTATGCGGAATGTATGGAGTAAACATAGACGAGAGCATGGGTTCAGA
TGAGTTTGAATATTTGATTGCAGACAATTATAATCCGTCTATGGAAATACCTAATGGTTTTGTTACAAAGATTATTCCTA
AATACACCTGGGCTGTTTTTGCTTGCAAGGGTGCAATGCCGAAAGCTATGCTAGATGTGGGCAGAAAAATCTTCTCAGAA
TGGCTACCTAATTGCAAGGATTATGAAATTGCAGCAGGTTACAATATTGAAATGTACACCAATACGGCTGATTATCCTAA
AGGTAATCAGGATGAAAACTACTACAGCGAAATTTGGATTCCTGTTAAGAAAAAATAA

Upstream 100 bases:

>100_bases
TTATTTAATAATCTTTTAGACAAGACAAAATATAACACAAAAAGTCGGTAACAACCGCTTGAAAAGAGATAAGATATAGA
TACAGATAGGGGTGATCATT

Downstream 100 bases:

>100_bases
CTACGTAAAAGAGCATAATTTTTAAAAAAGGGGAGGGGGGAGTAACATGATTTTTATTATAATAGTGCTAATAATTTTTT
TGTTGCTTTTACTCTCCTAT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MKWIEGIGEAINYIEENITEEIPIENIAKKAFVSTFYFQKGFAMLCGLTVGEYIRQRRLTLAGSELVSTDEKIIDIALKY
GYNSPDSFTKAFTRFHSVTPTAVRKDGAMIKSFAPLKIKFLLEGGYIMDYKIVEKDSFTVMGVSKVFKYDSATTKVPEFW
TEHYETGKGKYVCGMYGVNIDESMGSDEFEYLIADNYNPSMEIPNGFVTKIIPKYTWAVFACKGAMPKAMLDVGRKIFSE
WLPNCKDYEIAAGYNIEMYTNTADYPKGNQDENYYSEIWIPVKKK

Sequences:

>Translated_285_residues
MKWIEGIGEAINYIEENITEEIPIENIAKKAFVSTFYFQKGFAMLCGLTVGEYIRQRRLTLAGSELVSTDEKIIDIALKY
GYNSPDSFTKAFTRFHSVTPTAVRKDGAMIKSFAPLKIKFLLEGGYIMDYKIVEKDSFTVMGVSKVFKYDSATTKVPEFW
TEHYETGKGKYVCGMYGVNIDESMGSDEFEYLIADNYNPSMEIPNGFVTKIIPKYTWAVFACKGAMPKAMLDVGRKIFSE
WLPNCKDYEIAAGYNIEMYTNTADYPKGNQDENYYSEIWIPVKKK
>Mature_285_residues
MKWIEGIGEAINYIEENITEEIPIENIAKKAFVSTFYFQKGFAMLCGLTVGEYIRQRRLTLAGSELVSTDEKIIDIALKY
GYNSPDSFTKAFTRFHSVTPTAVRKDGAMIKSFAPLKIKFLLEGGYIMDYKIVEKDSFTVMGVSKVFKYDSATTKVPEFW
TEHYETGKGKYVCGMYGVNIDESMGSDEFEYLIADNYNPSMEIPNGFVTKIIPKYTWAVFACKGAMPKAMLDVGRKIFSE
WLPNCKDYEIAAGYNIEMYTNTADYPKGNQDENYYSEIWIPVKKK

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790497, Length=98, Percent_Identity=40.8163265306122, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790857, Length=292, Percent_Identity=22.6027397260274, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87081928, Length=98, Percent_Identity=27.5510204081633, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32528; Mature: 32528

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWIEGIGEAINYIEENITEEIPIENIAKKAFVSTFYFQKGFAMLCGLTVGEYIRQRRLT
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGSELVSTDEKIIDIALKYGYNSPDSFTKAFTRFHSVTPTAVRKDGAMIKSFAPLKIKF
HCCCHHHCCCHHHEEEHHCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCHHHCCCCEEEEE
LLEGGYIMDYKIVEKDSFTVMGVSKVFKYDSATTKVPEFWTEHYETGKGKYVCGMYGVNI
EEECCEEEEEEEEECCCEEEEEHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCC
DESMGSDEFEYLIADNYNPSMEIPNGFVTKIIPKYTWAVFACKGAMPKAMLDVGRKIFSE
HHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHH
WLPNCKDYEIAAGYNIEMYTNTADYPKGNQDENYYSEIWIPVKKK
HCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MKWIEGIGEAINYIEENITEEIPIENIAKKAFVSTFYFQKGFAMLCGLTVGEYIRQRRLT
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGSELVSTDEKIIDIALKYGYNSPDSFTKAFTRFHSVTPTAVRKDGAMIKSFAPLKIKF
HCCCHHHCCCHHHEEEHHCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCHHHCCCCEEEEE
LLEGGYIMDYKIVEKDSFTVMGVSKVFKYDSATTKVPEFWTEHYETGKGKYVCGMYGVNI
EEECCEEEEEEEEECCCEEEEEHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCC
DESMGSDEFEYLIADNYNPSMEIPNGFVTKIIPKYTWAVFACKGAMPKAMLDVGRKIFSE
HHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHH
WLPNCKDYEIAAGYNIEMYTNTADYPKGNQDENYYSEIWIPVKKK
HCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]