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The map label for this gene is stc [H]

Identifier: 170754513

GI number: 170754513

Start: 34069

End: 35634

Strand: Direct

Name: stc [H]

Synonym: CLD_0790

Alternate gene names: 170754513

Gene position: 34069-35634 (Clockwise)

Preceding gene: 170755918

Following gene: 170756985

Centisome position: 0.86

GC content: 23.95

Gene sequence:

>1566_bases
ATGAAATTAGAAATAATAACAGAAGATCGTTTAGGCATGGTGCTAGATATTTTAAATGTGTTATACAATGAGAGTATGGA
TATAAAATCTCTAGAGGTATTTCCTAAAAAAATATATATAAACATAAATAAAAAGATTTCTTACAACAAAAACATGATAA
TCAAGAAAATAAAAAATATAAAGGGAGTAGTAAGGGTAAAAAAGATAGATATACTGCCTTATGAAAAGGATGAAAAAAAA
TTGTTTACTATAATTGATTCTTTGGAGGAGGGAGTAATTTTTGTCAATGAAAAATGTCAAGTAGAGGTTTTTAATAAATA
CTGTGAAAACTTATTTAATACTTTAAAAGAAAATGCAATTAGAAAGCATATAAAAGAAATCTTGGGACAAAATCAACTCA
TATTAGATGCTTTAAAAATGGGAAAAGATTATGATAATTTACAAGTCTTCATTAATAATAAAGATAGAAAGGGAATGTAT
GTATCTACAGCAAGAGCTATTAAAGATGATAAGAATAAAACAATAGGATTTGTTATATTAATAAAAGATTTAAAAGAAAC
TATTGAAATAGTAAATTCTATTAAATATAAGGAAGATGAAGCATTTAAGGGGATAATAGGAAAAAGTATCTGTATTGATA
ATTTAAAAGAAATATGTAAATCAGTTGCTAAAACAAATTCAACCGTATTAATTTGTGGAGAATCTGGAACAGGAAAAGAA
CTTTTTGCAAAGGCTATTTATAAATTAAGCTTGAGAAATAATAAAAACTTTGTTACTGTAAATTGTGCTGGTTTACAGGA
TAATTTAATAGAAAGTGAACTTTTTGGTTATGAAGCAGGAAGTTTTACAGGAGCTAAATCTAATGGTAAAGAAGGTTTTT
TTAAGTTAGCGGATAAAGGTACTATATTTTTAGATGAAATTGGAGAACTTCCTCTTAATATTCAATGTAAATTTTTAAGA
GTATTACAAGAAGGAACTATAAGAAAAATAGGAAGTACAAAGGAAGAAAAAATAGATGTGAGAATAATTGCTGCTACTAA
TAAAAATTTAGAAGAAATGGTTTTAAACGGAAAATTTAGAGAAGACTTATACTATAGATTAAATGTAGTACCTATAGAAA
TACCTCCACTAAGAGAAAGAAAAGAAGATATACAATTATTAGTAGATAATTTTGTAAAAGCTTTAAATAAAAGTTTAAAT
AAAAATATTAGATATATAGATAAAAAATTTATAAATAAATTATTAAAATATAATTTCCCAGGTAATATTAGGGAACTTCA
AAATATAATTGAAAGAACTATGAATTTGTGTTCGGACAATATATTAAGTGATAAAAATCTCAGTATAAATACTAATATTA
CATTAAATAATGATAAAAATAATGATAGTGGTGCATTACTTTTACAAGATATAGTGGAGAAAGCAGAAAAATGTGCTATA
CAGAAGGTAATGAATGAATATAAAAGTTTAAGAAAAGTAGGCAAAGTATTAGGAGTTTCTCATACTACTGTAATGAATAA
AATAAAAAATATGGAATTGTATGTAAATAAATATTTACAATTGTAA

Upstream 100 bases:

>100_bases
TTATTTTTTGTAAATAGTAATATCAATTAAATATAATTTAAATTTGATATAATATAAAATAATAGGTATTATTTAGTATT
CCATAAAAGGGGCGAATTCT

Downstream 100 bases:

>100_bases
AAAAATATTGCCAGTTTCAAATAAAATTATGTTATAGACTATTTATATCTTCAGGTTAATATAGTTAATTTATATATTTA
AGACCATTGGTATATTATTT

Product: putative sensory box sigma-54 dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 521; Mature: 521

Protein sequence:

>521_residues
MKLEIITEDRLGMVLDILNVLYNESMDIKSLEVFPKKIYININKKISYNKNMIIKKIKNIKGVVRVKKIDILPYEKDEKK
LFTIIDSLEEGVIFVNEKCQVEVFNKYCENLFNTLKENAIRKHIKEILGQNQLILDALKMGKDYDNLQVFINNKDRKGMY
VSTARAIKDDKNKTIGFVILIKDLKETIEIVNSIKYKEDEAFKGIIGKSICIDNLKEICKSVAKTNSTVLICGESGTGKE
LFAKAIYKLSLRNNKNFVTVNCAGLQDNLIESELFGYEAGSFTGAKSNGKEGFFKLADKGTIFLDEIGELPLNIQCKFLR
VLQEGTIRKIGSTKEEKIDVRIIAATNKNLEEMVLNGKFREDLYYRLNVVPIEIPPLRERKEDIQLLVDNFVKALNKSLN
KNIRYIDKKFINKLLKYNFPGNIRELQNIIERTMNLCSDNILSDKNLSINTNITLNNDKNNDSGALLLQDIVEKAEKCAI
QKVMNEYKSLRKVGKVLGVSHTTVMNKIKNMELYVNKYLQL

Sequences:

>Translated_521_residues
MKLEIITEDRLGMVLDILNVLYNESMDIKSLEVFPKKIYININKKISYNKNMIIKKIKNIKGVVRVKKIDILPYEKDEKK
LFTIIDSLEEGVIFVNEKCQVEVFNKYCENLFNTLKENAIRKHIKEILGQNQLILDALKMGKDYDNLQVFINNKDRKGMY
VSTARAIKDDKNKTIGFVILIKDLKETIEIVNSIKYKEDEAFKGIIGKSICIDNLKEICKSVAKTNSTVLICGESGTGKE
LFAKAIYKLSLRNNKNFVTVNCAGLQDNLIESELFGYEAGSFTGAKSNGKEGFFKLADKGTIFLDEIGELPLNIQCKFLR
VLQEGTIRKIGSTKEEKIDVRIIAATNKNLEEMVLNGKFREDLYYRLNVVPIEIPPLRERKEDIQLLVDNFVKALNKSLN
KNIRYIDKKFINKLLKYNFPGNIRELQNIIERTMNLCSDNILSDKNLSINTNITLNNDKNNDSGALLLQDIVEKAEKCAI
QKVMNEYKSLRKVGKVLGVSHTTVMNKIKNMELYVNKYLQL
>Mature_521_residues
MKLEIITEDRLGMVLDILNVLYNESMDIKSLEVFPKKIYININKKISYNKNMIIKKIKNIKGVVRVKKIDILPYEKDEKK
LFTIIDSLEEGVIFVNEKCQVEVFNKYCENLFNTLKENAIRKHIKEILGQNQLILDALKMGKDYDNLQVFINNKDRKGMY
VSTARAIKDDKNKTIGFVILIKDLKETIEIVNSIKYKEDEAFKGIIGKSICIDNLKEICKSVAKTNSTVLICGESGTGKE
LFAKAIYKLSLRNNKNFVTVNCAGLQDNLIESELFGYEAGSFTGAKSNGKEGFFKLADKGTIFLDEIGELPLNIQCKFLR
VLQEGTIRKIGSTKEEKIDVRIIAATNKNLEEMVLNGKFREDLYYRLNVVPIEIPPLRERKEDIQLLVDNFVKALNKSLN
KNIRYIDKKFINKLLKYNFPGNIRELQNIIERTMNLCSDNILSDKNLSINTNITLNNDKNNDSGALLLQDIVEKAEKCAI
QKVMNEYKSLRKVGKVLGVSHTTVMNKIKNMELYVNKYLQL

Specific function: Unknown

COG id: COG3283

COG function: function code KE; Transcriptional regulator of aromatic amino acids metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=453, Percent_Identity=34.4370860927152, Blast_Score=274, Evalue=9e-75,
Organism=Escherichia coli, GI87082117, Length=391, Percent_Identity=38.8746803069054, Blast_Score=270, Evalue=2e-73,
Organism=Escherichia coli, GI1787583, Length=525, Percent_Identity=30.8571428571429, Blast_Score=265, Evalue=4e-72,
Organism=Escherichia coli, GI1789087, Length=317, Percent_Identity=42.5867507886435, Blast_Score=251, Evalue=9e-68,
Organism=Escherichia coli, GI1788550, Length=302, Percent_Identity=42.7152317880795, Blast_Score=246, Evalue=2e-66,
Organism=Escherichia coli, GI1790437, Length=309, Percent_Identity=39.8058252427184, Blast_Score=241, Evalue=8e-65,
Organism=Escherichia coli, GI1788905, Length=327, Percent_Identity=38.8379204892966, Blast_Score=240, Evalue=1e-64,
Organism=Escherichia coli, GI1786524, Length=325, Percent_Identity=35.3846153846154, Blast_Score=228, Evalue=5e-61,
Organism=Escherichia coli, GI1790299, Length=328, Percent_Identity=36.5853658536585, Blast_Score=226, Evalue=3e-60,
Organism=Escherichia coli, GI87082152, Length=235, Percent_Identity=47.6595744680851, Blast_Score=218, Evalue=9e-58,
Organism=Escherichia coli, GI87081872, Length=307, Percent_Identity=34.8534201954397, Blast_Score=189, Evalue=5e-49,
Organism=Escherichia coli, GI87081858, Length=442, Percent_Identity=25.1131221719457, Blast_Score=146, Evalue=4e-36,
Organism=Escherichia coli, GI1789828, Length=234, Percent_Identity=33.7606837606838, Blast_Score=136, Evalue=3e-33,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 59733; Mature: 59733

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLEIITEDRLGMVLDILNVLYNESMDIKSLEVFPKKIYININKKISYNKNMIIKKIKNI
CEEEEECCCHHHHHHHHHHHHHCCCCCCCHHEECCEEEEEEECCEECCCCHHHHHHHHHH
KGVVRVKKIDILPYEKDEKKLFTIIDSLEEGVIFVNEKCQVEVFNKYCENLFNTLKENAI
HHEEEEEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
RKHIKEILGQNQLILDALKMGKDYDNLQVFINNKDRKGMYVSTARAIKDDKNKTIGFVIL
HHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEHHHHHHCCCCCEEEEEEE
IKDLKETIEIVNSIKYKEDEAFKGIIGKSICIDNLKEICKSVAKTNSTVLICGESGTGKE
EHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH
LFAKAIYKLSLRNNKNFVTVNCAGLQDNLIESELFGYEAGSFTGAKSNGKEGFFKLADKG
HHHHHHHHHEECCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCC
TIFLDEIGELPLNIQCKFLRVLQEGTIRKIGSTKEEKIDVRIIAATNKNLEEMVLNGKFR
EEEEEHHCCCCCCCHHHHHHHHHHCCHHHCCCCCCCCEEEEEEEECCCCHHHHHHCCCHH
EDLYYRLNVVPIEIPPLRERKEDIQLLVDNFVKALNKSLNKNIRYIDKKFINKLLKYNFP
HCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
GNIRELQNIIERTMNLCSDNILSDKNLSINTNITLNNDKNNDSGALLLQDIVEKAEKCAI
CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
QKVMNEYKSLRKVGKVLGVSHTTVMNKIKNMELYVNKYLQL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKLEIITEDRLGMVLDILNVLYNESMDIKSLEVFPKKIYININKKISYNKNMIIKKIKNI
CEEEEECCCHHHHHHHHHHHHHCCCCCCCHHEECCEEEEEEECCEECCCCHHHHHHHHHH
KGVVRVKKIDILPYEKDEKKLFTIIDSLEEGVIFVNEKCQVEVFNKYCENLFNTLKENAI
HHEEEEEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
RKHIKEILGQNQLILDALKMGKDYDNLQVFINNKDRKGMYVSTARAIKDDKNKTIGFVIL
HHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEHHHHHHCCCCCEEEEEEE
IKDLKETIEIVNSIKYKEDEAFKGIIGKSICIDNLKEICKSVAKTNSTVLICGESGTGKE
EHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH
LFAKAIYKLSLRNNKNFVTVNCAGLQDNLIESELFGYEAGSFTGAKSNGKEGFFKLADKG
HHHHHHHHHEECCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCC
TIFLDEIGELPLNIQCKFLRVLQEGTIRKIGSTKEEKIDVRIIAATNKNLEEMVLNGKFR
EEEEEHHCCCCCCCHHHHHHHHHHCCHHHCCCCCCCCEEEEEEEECCCCHHHHHHCCCHH
EDLYYRLNVVPIEIPPLRERKEDIQLLVDNFVKALNKSLNKNIRYIDKKFINKLLKYNFP
HCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
GNIRELQNIIERTMNLCSDNILSDKNLSINTNITLNNDKNNDSGALLLQDIVEKAEKCAI
CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
QKVMNEYKSLRKVGKVLGVSHTTVMNKIKNMELYVNKYLQL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA