| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170754501
Identifier: 170754501
GI number: 170754501
Start: 2323605
End: 2324552
Strand: Reverse
Name: 170754501
Synonym: CLD_2447
Alternate gene names: NA
Gene position: 2324552-2323605 (Counterclockwise)
Preceding gene: 170756994
Following gene: 170757487
Centisome position: 58.73
GC content: 35.44
Gene sequence:
>948_bases ATGTCAACAAAAATAAGCGATATTATAGTACCAGAGGTATTTAATCCTTATGTAGTACAAGAAACAAATAGATTGGATGC GTTTGTTCAATCTGGAATCATAGCGAGTGATCCAGAATTGGACGTTTTAGCAACTAGCGGAGGTATAATTGTTAATATGC CTTACTGGAACGATTTGGAGGGAGATTCAGAGGAACTTTCCGATAAGGGTTCATTAACTGTGAATAAAATTACAGCTGGA CAAGACAGAGCAAGACTACACATGAGAGGAAAGGCATGGGGAGTTAACGACTTAGCAAAAGCTTTAAGTGGTGATGACCC AATGGCAGTTATAGGTCAAAAAGTTGCTAAATTCTGGGTAGGAGAAAGAAGCAAAATATTGTTTAAATCTTTAGCTGGAA TCGAAACAACTGCTTCAAATAATGTACATGACATATCTGCTTTAACTGGTGCTGAAGCTATAATTAGCGTTGGTACTGCA CTTGATGCAAAACAAAAGTTAGGAGATAATGCTGCTAAATTAACTGGCATAGCAATGCACTCAGCAGTGTATACGAAATT ACAAAAGAATAATGAAATTGAATTTGTACCAGATTCTGAAACAAAAGTTCAAATCCCATATTACTTAGGTTATAGAGTTA TTGTTGATGACCAATGTCCAAACAGCTCAGGAGTTTATACAACTTATTTATTTGGACAAGGTGCTTTTGGCTTAGGGAAT GGTGCAGCACCAGTACCAACTGAAACTGATAGAGATAGTTTGGCCGGAGAAGATGTATTGATTAATAGACAACACTTTTT ATTACATCCAAGAGGAATTAAGTGGACTGAAACTACTGTAACTGGAAAAACACCAACTTTTGCAGAAATTGCTACCGCTG ATAATTGGAATAAAGTATATGATACAAAGAATATTAGAATAGTGATATTTAAACATAAAATAGCATAG
Upstream 100 bases:
>100_bases TCAATTTAACAAAACAAGCTCAAATATTAAAAGAAAATCCAGAACTCGCTGCACAATTAAAGGCGGCAGTAAAATAATTA AATTTTAGGAGGAATGTAAA
Downstream 100 bases:
>100_bases TAAAAGGAAGTCTAAACTTCCTTTTATTTGTGTTTATGGGGGTGTATAAATGGGTTTAGCTACCTTTAATAGAATGAGAA GACAATTAGAAAAAGAGAAA
Product: prophage LambdaCh01, coat protein
Products: NA
Alternate protein names: Phage Coat Protein; Phage-Related Minor Capsid Protein; Minor Capsid Protein; Phage-Like Coat Protein; Phage-Like Protein; Coat Protein; Prophage Lp1 Protein; Head Protein; SPP1 Phage Coat Protein P
Number of amino acids: Translated: 315; Mature: 314
Protein sequence:
>315_residues MSTKISDIIVPEVFNPYVVQETNRLDAFVQSGIIASDPELDVLATSGGIIVNMPYWNDLEGDSEELSDKGSLTVNKITAG QDRARLHMRGKAWGVNDLAKALSGDDPMAVIGQKVAKFWVGERSKILFKSLAGIETTASNNVHDISALTGAEAIISVGTA LDAKQKLGDNAAKLTGIAMHSAVYTKLQKNNEIEFVPDSETKVQIPYYLGYRVIVDDQCPNSSGVYTTYLFGQGAFGLGN GAAPVPTETDRDSLAGEDVLINRQHFLLHPRGIKWTETTVTGKTPTFAEIATADNWNKVYDTKNIRIVIFKHKIA
Sequences:
>Translated_315_residues MSTKISDIIVPEVFNPYVVQETNRLDAFVQSGIIASDPELDVLATSGGIIVNMPYWNDLEGDSEELSDKGSLTVNKITAG QDRARLHMRGKAWGVNDLAKALSGDDPMAVIGQKVAKFWVGERSKILFKSLAGIETTASNNVHDISALTGAEAIISVGTA LDAKQKLGDNAAKLTGIAMHSAVYTKLQKNNEIEFVPDSETKVQIPYYLGYRVIVDDQCPNSSGVYTTYLFGQGAFGLGN GAAPVPTETDRDSLAGEDVLINRQHFLLHPRGIKWTETTVTGKTPTFAEIATADNWNKVYDTKNIRIVIFKHKIA >Mature_314_residues STKISDIIVPEVFNPYVVQETNRLDAFVQSGIIASDPELDVLATSGGIIVNMPYWNDLEGDSEELSDKGSLTVNKITAGQ DRARLHMRGKAWGVNDLAKALSGDDPMAVIGQKVAKFWVGERSKILFKSLAGIETTASNNVHDISALTGAEAIISVGTAL DAKQKLGDNAAKLTGIAMHSAVYTKLQKNNEIEFVPDSETKVQIPYYLGYRVIVDDQCPNSSGVYTTYLFGQGAFGLGNG AAPVPTETDRDSLAGEDVLINRQHFLLHPRGIKWTETTVTGKTPTFAEIATADNWNKVYDTKNIRIVIFKHKIA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34245; Mature: 34114
Theoretical pI: Translated: 5.40; Mature: 5.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTKISDIIVPEVFNPYVVQETNRLDAFVQSGIIASDPELDVLATSGGIIVNMPYWNDLE CCCCCCCEECCCCCCCEEEECCHHHHHHHHCCEECCCCCEEEEEECCCEEEECCCCCCCC GDSEELSDKGSLTVNKITAGQDRARLHMRGKAWGVNDLAKALSGDDPMAVIGQKVAKFWV CCHHHHCCCCCEEEEEEECCCCCEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHC GERSKILFKSLAGIETTASNNVHDISALTGAEAIISVGTALDAKQKLGDNAAKLTGIAMH CCCHHHHHHHHCCCEECCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH SAVYTKLQKNNEIEFVPDSETKVQIPYYLGYRVIVDDQCPNSSGVYTTYLFGQGAFGLGN HHHHHHHHCCCCEEEECCCCCEEEEEEEECEEEEECCCCCCCCCCEEEEEECCCCCCCCC GAAPVPTETDRDSLAGEDVLINRQHFLLHPRGIKWTETTVTGKTPTFAEIATADNWNKVY CCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCEEEEEEECCCCCCCEEEEECCCCCCEE DTKNIRIVIFKHKIA CCCCEEEEEEEEECC >Mature Secondary Structure STKISDIIVPEVFNPYVVQETNRLDAFVQSGIIASDPELDVLATSGGIIVNMPYWNDLE CCCCCCEECCCCCCCEEEECCHHHHHHHHCCEECCCCCEEEEEECCCEEEECCCCCCCC GDSEELSDKGSLTVNKITAGQDRARLHMRGKAWGVNDLAKALSGDDPMAVIGQKVAKFWV CCHHHHCCCCCEEEEEEECCCCCEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHC GERSKILFKSLAGIETTASNNVHDISALTGAEAIISVGTALDAKQKLGDNAAKLTGIAMH CCCHHHHHHHHCCCEECCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH SAVYTKLQKNNEIEFVPDSETKVQIPYYLGYRVIVDDQCPNSSGVYTTYLFGQGAFGLGN HHHHHHHHCCCCEEEECCCCCEEEEEEEECEEEEECCCCCCCCCCEEEEEECCCCCCCCC GAAPVPTETDRDSLAGEDVLINRQHFLLHPRGIKWTETTVTGKTPTFAEIATADNWNKVY CCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCEEEEEEECCCCCCCEEEEECCCCCCEE DTKNIRIVIFKHKIA CCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA