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The map label for this gene is ytrA [H]

Identifier: 170754419

GI number: 170754419

Start: 2972854

End: 2973234

Strand: Reverse

Name: ytrA [H]

Synonym: CLD_1783

Alternate gene names: 170754419

Gene position: 2973234-2972854 (Counterclockwise)

Preceding gene: 170757068

Following gene: 170755897

Centisome position: 75.12

GC content: 29.66

Gene sequence:

>381_bases
ATGATAAAGATAGATAGTAGAAGCAGTAAACCTATATATGAGCAAATAATAGATGGCATAAAGGAGAATATTGTAAGGGG
AATATTAAAAACTGGGGATAAATTACCTTCTGTAAGAGAACTGGCCGTTATGCTAACTACAAATCCTAATACAGTTAGTA
AAGCCTATAAAGAATTAGAAAGGGAAAAGATTATAGAGGTTTTAAGGGGAAAGGGAACTTATATATCAGATTTTAATCCT
AAGGAGGATGAGGAAAAAATGAGTTTTTTAAGAAAGGAATTAAAACAACTTTTAATTGAGGCACAGTATATGGGTATAGA
TAAAAAGGAATTTTTAAAATTAATAGAAGAGATTTATGTAGATTTAGATGGAAAGAGGTGA

Upstream 100 bases:

>100_bases
AATGTAATTTGTATTTTAATTTAGATTATTAACAGCAGTTTAAAGCAGAGATTAAAAAATAAATATATTAGTAATAACAA
TAAAGTAAGGTGGTGAAGAA

Downstream 100 bases:

>100_bases
TTAAGTTGATAAGCATAAGTAGTGTATCAAAAATGTTAGGAGATAAAAAAGCTTTAAATAACATTAACTTAGATATAGAA
AAAGGAAGTATATTTGGTGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MIKIDSRSSKPIYEQIIDGIKENIVRGILKTGDKLPSVRELAVMLTTNPNTVSKAYKELEREKIIEVLRGKGTYISDFNP
KEDEEKMSFLRKELKQLLIEAQYMGIDKKEFLKLIEEIYVDLDGKR

Sequences:

>Translated_126_residues
MIKIDSRSSKPIYEQIIDGIKENIVRGILKTGDKLPSVRELAVMLTTNPNTVSKAYKELEREKIIEVLRGKGTYISDFNP
KEDEEKMSFLRKELKQLLIEAQYMGIDKKEFLKLIEEIYVDLDGKR
>Mature_126_residues
MIKIDSRSSKPIYEQIIDGIKENIVRGILKTGDKLPSVRELAVMLTTNPNTVSKAYKELEREKIIEVLRGKGTYISDFNP
KEDEEKMSFLRKELKQLLIEAQYMGIDKKEFLKLIEEIYVDLDGKR

Specific function: Negatively regulates ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14650; Mature: 14650

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKIDSRSSKPIYEQIIDGIKENIVRGILKTGDKLPSVRELAVMLTTNPNTVSKAYKELE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH
REKIIEVLRGKGTYISDFNPKEDEEKMSFLRKELKQLLIEAQYMGIDKKEFLKLIEEIYV
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
DLDGKR
HCCCCC
>Mature Secondary Structure
MIKIDSRSSKPIYEQIIDGIKENIVRGILKTGDKLPSVRELAVMLTTNPNTVSKAYKELE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH
REKIIEVLRGKGTYISDFNPKEDEEKMSFLRKELKQLLIEAQYMGIDKKEFLKLIEEIYV
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
DLDGKR
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]