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The map label for this gene is rodA

Identifier: 170754388

GI number: 170754388

Start: 3246894

End: 3248012

Strand: Reverse

Name: rodA

Synonym: CLD_1549

Alternate gene names: 170754388

Gene position: 3248012-3246894 (Counterclockwise)

Preceding gene: 170756623

Following gene: 170755160

Centisome position: 82.06

GC content: 28.42

Gene sequence:

>1119_bases
ATGTTTGATAAATTTTTTATAAATAAAAAACTTCTAAAAGAGTTAGATTATAGTATGATTATAATTTCTGTAGCAATAAT
GATTTTTAGTGCTTTAAATATATATAGTGCTACCCATATGAAATATGGTACAAGCTTTTTCCAAAAACAATTAATTTGGT
TAGCTGTAGGCCTTATTATAATTTATGTGGTTCTAATATTTGATTATATTATTATTGAAAATTATGCCAATATATTTTAT
TGGTTTACTATATTTTTACTTGTTTTAAATGATACGGTTCTTAAAAAAACAGTTAATGGTGCAGGTTCTTGGTTGAAGTT
AGGACCTATATCCATACAACCTTCAGAGTTTGCTAAAATGGCTTTAATTATAATGTTAGCTAAGAAATTAGATGATATGG
AAGGGGAAATAAACAACTTAAGGAATTTTTTTACCTTAGCTTTTTATGCTGTAATACCTATGATATTAATTGTAATTCAG
CCAGATATGGGTATGACTATGGTGTTTTTTTTCACTGTGTTAGGTATGTTTTTTGTAGCGGGATTAGACGGAAAAGTAAT
ATCAGGAGGGCTCGCTGGGATAACTGCACTAGTAGCTATTATTTGGAATTCTCCTTTAATGCAACAATATTGGAAAAATA
GGCTTACTTCATTTTTACATCCTGAAGCAGATGAATTAAATACGGGACTTCAACTTGTGCAATCGAAAATAGGTATAGGG
TCTGGCGGTTTTTTAGGAAAGGGATTTTTAAAAGGAACACAAATAGCAGGTGGATATATTCCAGAAGCTCATACAGATTT
TATTTTTTCTGTTATAGGTGAAGAATGGGGTTTTATAGGAGCTACAATTTTATTGGTATTTTATGGGATTTTAATATATA
AATTTATAAAAACTGCAAAAAATTCTAAAGATATATTTGGAACTATGGTAACCATTGGTGTAACAGCTTCTTTTATGTTT
TCAATACTTCAAAATATTGGGATGACTATAGGCATAGTACCTATAACAGGTATAGCACTTCCATTTATGAGTTATGGAGG
AAGTTCGTCATTAAATAATTTTTTAGCTTTGGCATTAGTATTAAATATAAATATGAGAAGAAAAAAAATAAATTTTTAA

Upstream 100 bases:

>100_bases
AAATAAAAAATTAAGAAATTTTTTTAGCTATGTATAAATTTGTACATAGCTTTTTGTGTGTGATATGGTATAATCATATT
TGTAATTAAGGGGTGATAAG

Downstream 100 bases:

>100_bases
AAGTATATAAACCTATTTAGTCAAATAAAAATTAGTACTAAATAGGTTTTTTCTTTATAATGAGCTTTTAAAATATATTT
ATGTATACACTATAATATTT

Product: rod shape-determining protein RodA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MFDKFFINKKLLKELDYSMIIISVAIMIFSALNIYSATHMKYGTSFFQKQLIWLAVGLIIIYVVLIFDYIIIENYANIFY
WFTIFLLVLNDTVLKKTVNGAGSWLKLGPISIQPSEFAKMALIIMLAKKLDDMEGEINNLRNFFTLAFYAVIPMILIVIQ
PDMGMTMVFFFTVLGMFFVAGLDGKVISGGLAGITALVAIIWNSPLMQQYWKNRLTSFLHPEADELNTGLQLVQSKIGIG
SGGFLGKGFLKGTQIAGGYIPEAHTDFIFSVIGEEWGFIGATILLVFYGILIYKFIKTAKNSKDIFGTMVTIGVTASFMF
SILQNIGMTIGIVPITGIALPFMSYGGSSSLNNFLALALVLNINMRRKKINF

Sequences:

>Translated_372_residues
MFDKFFINKKLLKELDYSMIIISVAIMIFSALNIYSATHMKYGTSFFQKQLIWLAVGLIIIYVVLIFDYIIIENYANIFY
WFTIFLLVLNDTVLKKTVNGAGSWLKLGPISIQPSEFAKMALIIMLAKKLDDMEGEINNLRNFFTLAFYAVIPMILIVIQ
PDMGMTMVFFFTVLGMFFVAGLDGKVISGGLAGITALVAIIWNSPLMQQYWKNRLTSFLHPEADELNTGLQLVQSKIGIG
SGGFLGKGFLKGTQIAGGYIPEAHTDFIFSVIGEEWGFIGATILLVFYGILIYKFIKTAKNSKDIFGTMVTIGVTASFMF
SILQNIGMTIGIVPITGIALPFMSYGGSSSLNNFLALALVLNINMRRKKINF
>Mature_372_residues
MFDKFFINKKLLKELDYSMIIISVAIMIFSALNIYSATHMKYGTSFFQKQLIWLAVGLIIIYVVLIFDYIIIENYANIFY
WFTIFLLVLNDTVLKKTVNGAGSWLKLGPISIQPSEFAKMALIIMLAKKLDDMEGEINNLRNFFTLAFYAVIPMILIVIQ
PDMGMTMVFFFTVLGMFFVAGLDGKVISGGLAGITALVAIIWNSPLMQQYWKNRLTSFLHPEADELNTGLQLVQSKIGIG
SGGFLGKGFLKGTQIAGGYIPEAHTDFIFSVIGEEWGFIGATILLVFYGILIYKFIKTAKNSKDIFGTMVTIGVTASFMF
SILQNIGMTIGIVPITGIALPFMSYGGSSSLNNFLALALVLNINMRRKKINF

Specific function: This is one of the proteins responsible for the rod shape of the cell. It is required for the expression of the enzymatic activity of PBP2, which is thought to synthesize peptidoglycan in the step of initiation of cell elongation [H]

COG id: COG0772

COG function: function code D; Bacterial cell division membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ftsW/rodA/spoVE family [H]

Homologues:

Organism=Escherichia coli, GI1786853, Length=360, Percent_Identity=35, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI1786277, Length=328, Percent_Identity=31.7073170731707, Blast_Score=148, Evalue=7e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001182
- InterPro:   IPR018365
- InterPro:   IPR011923 [H]

Pfam domain/function: PF01098 FTSW_RODA_SPOVE [H]

EC number: NA

Molecular weight: Translated: 41442; Mature: 41442

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS00428 FTSW_RODA_SPOVE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCHHHHHCCCC
>Mature Secondary Structure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HHCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]