| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170754384
Identifier: 170754384
GI number: 170754384
Start: 1342252
End: 1343145
Strand: Direct
Name: 170754384
Synonym: CLD_3358
Alternate gene names: NA
Gene position: 1342252-1343145 (Clockwise)
Preceding gene: 170757041
Following gene: 170756785
Centisome position: 33.91
GC content: 31.99
Gene sequence:
>894_bases ATGATGTCAATGGAAGAAATGAGAGATTGTCACGATAGAAATATGGGTTTTGATAAAGGTCATGGAAATGATTGTCATGA GCACCATCATAACGAGTGCCATGAACATTCTCACAACGAGTGCCATGAACATTCTCATAAAGATTGTGGGAAAGTACTAG AAAGTAAAACTGTACCAATGTGTGAAGGAACTAATCTAACACCACAAACAGTAAGAAGACCAGTGGTAGCTAAAGTACCA GTAGTAATCGCAGAAAAAGAGATACAAATAGATGTAGAGTCTAAAACAAGATTAAAAGAAAAATTCTTAGAAATAAAGAG AATAAAAAAAGATGTATTTTTAACTCAATGTGAATTAATACCAAGAGCAGGTGTTATAGAAAATGGTGTTCCTAGAACAG CAAAATTATTTATAAGTGGATTTATTAGAAAAAATATAGAATTTGCTACTGCAGACTGTATAAAAGATGATGTAGTAAGT GGTGAAATAAAGCATACTACAGAAAAGATACCATTTACTTGCGTAACAGAGGTAAGGTATATAACTCCTCCGGTATTAGC TAATAGAGCAATGCAGCAAGAAATAGATTTATTCTGTAGTGAACACGGGTGTGAACAGGAATGTAATTGTGAAGAGGAAC AACTAGGAAGACTTACTTGTCAAGAATTTTTAGAAGATTCAATAACACTTGTAGAAAAACCATTCTGTGAATTATTAGGA GCTAGAATATTTGAAGCAGATATACAAAGAAAACCTTGTTTTGAAAAAGGTGTAAAAGTTTTTGATGAATTAGTAGAGAA AATGGTAGTTTTCATTAGAGTAAAAGTTTTACAGTTGCAACAAGTAACTGTAGGTGATCCAAATAATAATACAGGAAATG AGTGTAGAAAATAA
Upstream 100 bases:
>100_bases TCCATCATAATATATAGTATAAGCTTTAAAATCAAATTACAAGCAATAATAATCAATCAAATAAGCTTTAAATAAATATT TTAAAACTAGGGAGGAATAA
Downstream 100 bases:
>100_bases TACGGAAAATTGCTAATGATAAGATTAATAATAAATAATGCTTAAGATAATTTAGGAGAAGGATTTCTCCTAAATTATCT AATTTTATATGTGGATTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 297; Mature: 297
Protein sequence:
>297_residues MMSMEEMRDCHDRNMGFDKGHGNDCHEHHHNECHEHSHNECHEHSHKDCGKVLESKTVPMCEGTNLTPQTVRRPVVAKVP VVIAEKEIQIDVESKTRLKEKFLEIKRIKKDVFLTQCELIPRAGVIENGVPRTAKLFISGFIRKNIEFATADCIKDDVVS GEIKHTTEKIPFTCVTEVRYITPPVLANRAMQQEIDLFCSEHGCEQECNCEEEQLGRLTCQEFLEDSITLVEKPFCELLG ARIFEADIQRKPCFEKGVKVFDELVEKMVVFIRVKVLQLQQVTVGDPNNNTGNECRK
Sequences:
>Translated_297_residues MMSMEEMRDCHDRNMGFDKGHGNDCHEHHHNECHEHSHNECHEHSHKDCGKVLESKTVPMCEGTNLTPQTVRRPVVAKVP VVIAEKEIQIDVESKTRLKEKFLEIKRIKKDVFLTQCELIPRAGVIENGVPRTAKLFISGFIRKNIEFATADCIKDDVVS GEIKHTTEKIPFTCVTEVRYITPPVLANRAMQQEIDLFCSEHGCEQECNCEEEQLGRLTCQEFLEDSITLVEKPFCELLG ARIFEADIQRKPCFEKGVKVFDELVEKMVVFIRVKVLQLQQVTVGDPNNNTGNECRK >Mature_297_residues MMSMEEMRDCHDRNMGFDKGHGNDCHEHHHNECHEHSHNECHEHSHKDCGKVLESKTVPMCEGTNLTPQTVRRPVVAKVP VVIAEKEIQIDVESKTRLKEKFLEIKRIKKDVFLTQCELIPRAGVIENGVPRTAKLFISGFIRKNIEFATADCIKDDVVS GEIKHTTEKIPFTCVTEVRYITPPVLANRAMQQEIDLFCSEHGCEQECNCEEEQLGRLTCQEFLEDSITLVEKPFCELLG ARIFEADIQRKPCFEKGVKVFDELVEKMVVFIRVKVLQLQQVTVGDPNNNTGNECRK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34033; Mature: 34033
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 8.4 %Cys+Met (Translated Protein) 5.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 8.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSMEEMRDCHDRNMGFDKGHGNDCHEHHHNECHEHSHNECHEHSHKDCGKVLESKTVPM CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC CEGTNLTPQTVRRPVVAKVPVVIAEKEIQIDVESKTRLKEKFLEIKRIKKDVFLTQCELI CCCCCCCHHHHHCCHHHHCCEEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHC PRAGVIENGVPRTAKLFISGFIRKNIEFATADCIKDDVVSGEIKHTTEKIPFTCVTEVRY CCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHCCCCCEEHHHHH ITPPVLANRAMQQEIDLFCSEHGCEQECNCEEEQLGRLTCQEFLEDSITLVEKPFCELLG CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARIFEADIQRKPCFEKGVKVFDELVEKMVVFIRVKVLQLQQVTVGDPNNNTGNECRK HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHCC >Mature Secondary Structure MMSMEEMRDCHDRNMGFDKGHGNDCHEHHHNECHEHSHNECHEHSHKDCGKVLESKTVPM CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC CEGTNLTPQTVRRPVVAKVPVVIAEKEIQIDVESKTRLKEKFLEIKRIKKDVFLTQCELI CCCCCCCHHHHHCCHHHHCCEEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHC PRAGVIENGVPRTAKLFISGFIRKNIEFATADCIKDDVVSGEIKHTTEKIPFTCVTEVRY CCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHCCCCCEEHHHHH ITPPVLANRAMQQEIDLFCSEHGCEQECNCEEEQLGRLTCQEFLEDSITLVEKPFCELLG CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARIFEADIQRKPCFEKGVKVFDELVEKMVVFIRVKVLQLQQVTVGDPNNNTGNECRK HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA