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The map label for this gene is ywqA [H]

Identifier: 170754301

GI number: 170754301

Start: 2343659

End: 2344756

Strand: Reverse

Name: ywqA [H]

Synonym: CLD_2423

Alternate gene names: 170754301

Gene position: 2344756-2343659 (Counterclockwise)

Preceding gene: 170756285

Following gene: 170757857

Centisome position: 59.24

GC content: 29.96

Gene sequence:

>1098_bases
TTGATAATCTGCCAAAAATCAAAATTACAAGATTGGTGTGAGCACTTCAAAACATATTACCCAGAGTATAACACATTTAT
ATACTCTAAAACAAGAGAAATACCATCCAATAGTGTTGTAATAATAAACTACGATTTGGTATGGCGTAGACCAAAATTAT
CACAGATAGAAAATTTCACTTTGATGTTAGATGAAAGTTCTATGATTAAGAATCCAACATCTAAGAGAACTAAATTTATA
TTAAAACTTAAAGCAGAGAATGTAATACTTTTATCAGGCACGCCCTGTGGTGGAAAATATGAAGAACTTCACACTCAATG
TAAGTTATTAGGTTGGAATATATCTAAAAAACTTTATTGGCAGCAGTATATAAAGTTTATAAATATGGATGTTGGAGGGT
TTAAGGTTCCTAAAGTAGTTGGTTATAAGAATGTTGAAAGACTTAAACAAAAGCTACATGACCATGGATCTATATTTATG
AAAACTGAGGAAGTGTTTGATTTACCAGAGCAGGTAGAAATATCAGTTTTAATTGAGAATACTAAAGAGTATAAGAAATT
TAAGAAAGATAGATTGATTACTATAAATGATACTGAGTTGGTTGGAGATACAAGTTTAACTAAGATGCTTTATTTAAGGC
AGTTAGCTTCACAATATAATCCTAATAAATTAAGTTCCTTAAAAGATTTATTAGAGAGTACAGAAGATAGAGTAATCATA
TTCTATAACTTTACAGAAGAAATGGAACAAATTAAAGAGGTATGTGGAAGATTAGAAAAACCAATATCTATAGTAAATGG
ACAAACTAAGGACTTGGAAAACTATAAAACAAAAGATAATACAGTGGTATTAGTTCAGTACCAGGCAGGTGCTATGGGAC
TTAACTTACAACTTAGCAACAAGATTATTTATTATTCGCTACCACTAGCAAGTGAATTATTTGAACAGAGTAAAAAACGT
ACTCACAGGATTGGCCAAACACGAACTTGTATGTATTGGTACTTAATTACTAAAGGTTGTATAGAAGAGCAGATATTTGA
AACTTTAAAAGAACGTAGAGATTATACAAATAAATTATTTGAAGAGTTGGAGGGCTAA

Upstream 100 bases:

>100_bases
AAAAATTTTAATAGAGTTGGATTTTTCTTGGATATGGGCTTAGGTTAGCAAAACCTTTGTAGGGTCAGAAAAATTAAAAG
AGCTCAACACCAATATAAAT

Downstream 100 bases:

>100_bases
ATAATGAAAACTTATAAAACATGGGAAGTTATAAAGATGCTTGCTGAAGATCCAAAACTTAAATTTGAAGGTAAGGCGCT
AAATAAATTAACTAAAATAC

Product: phage helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MIICQKSKLQDWCEHFKTYYPEYNTFIYSKTREIPSNSVVIINYDLVWRRPKLSQIENFTLMLDESSMIKNPTSKRTKFI
LKLKAENVILLSGTPCGGKYEELHTQCKLLGWNISKKLYWQQYIKFINMDVGGFKVPKVVGYKNVERLKQKLHDHGSIFM
KTEEVFDLPEQVEISVLIENTKEYKKFKKDRLITINDTELVGDTSLTKMLYLRQLASQYNPNKLSSLKDLLESTEDRVII
FYNFTEEMEQIKEVCGRLEKPISIVNGQTKDLENYKTKDNTVVLVQYQAGAMGLNLQLSNKIIYYSLPLASELFEQSKKR
THRIGQTRTCMYWYLITKGCIEEQIFETLKERRDYTNKLFEELEG

Sequences:

>Translated_365_residues
MIICQKSKLQDWCEHFKTYYPEYNTFIYSKTREIPSNSVVIINYDLVWRRPKLSQIENFTLMLDESSMIKNPTSKRTKFI
LKLKAENVILLSGTPCGGKYEELHTQCKLLGWNISKKLYWQQYIKFINMDVGGFKVPKVVGYKNVERLKQKLHDHGSIFM
KTEEVFDLPEQVEISVLIENTKEYKKFKKDRLITINDTELVGDTSLTKMLYLRQLASQYNPNKLSSLKDLLESTEDRVII
FYNFTEEMEQIKEVCGRLEKPISIVNGQTKDLENYKTKDNTVVLVQYQAGAMGLNLQLSNKIIYYSLPLASELFEQSKKR
THRIGQTRTCMYWYLITKGCIEEQIFETLKERRDYTNKLFEELEG
>Mature_365_residues
MIICQKSKLQDWCEHFKTYYPEYNTFIYSKTREIPSNSVVIINYDLVWRRPKLSQIENFTLMLDESSMIKNPTSKRTKFI
LKLKAENVILLSGTPCGGKYEELHTQCKLLGWNISKKLYWQQYIKFINMDVGGFKVPKVVGYKNVERLKQKLHDHGSIFM
KTEEVFDLPEQVEISVLIENTKEYKKFKKDRLITINDTELVGDTSLTKMLYLRQLASQYNPNKLSSLKDLLESTEDRVII
FYNFTEEMEQIKEVCGRLEKPISIVNGQTKDLENYKTKDNTVVLVQYQAGAMGLNLQLSNKIIYYSLPLASELFEQSKKR
THRIGQTRTCMYWYLITKGCIEEQIFETLKERRDYTNKLFEELEG

Specific function: Unknown

COG id: COG0553

COG function: function code KL; Superfamily II DNA/RNA helicases, SNF2 family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI164419749, Length=398, Percent_Identity=22.3618090452261, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI187761314, Length=377, Percent_Identity=21.4854111405836, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI21071060, Length=377, Percent_Identity=21.4854111405836, Blast_Score=69, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI193204424, Length=417, Percent_Identity=23.9808153477218, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI32563629, Length=409, Percent_Identity=22.2493887530562, Blast_Score=69, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6322495, Length=326, Percent_Identity=23.6196319018405, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR022138
- InterPro:   IPR000330 [H]

Pfam domain/function: PF12419 DUF3670; PF00271 Helicase_C; PF00176 SNF2_N [H]

EC number: NA

Molecular weight: Translated: 43010; Mature: 43010

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIICQKSKLQDWCEHFKTYYPEYNTFIYSKTREIPSNSVVIINYDLVWRRPKLSQIENFT
CEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEEEECCCCHHHHCCEE
LMLDESSMIKNPTSKRTKFILKLKAENVILLSGTPCGGKYEELHTQCKLLGWNISKKLYW
EEEECCHHHCCCCCHHEEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHH
QQYIKFINMDVGGFKVPKVVGYKNVERLKQKLHDHGSIFMKTEEVFDLPEQVEISVLIEN
HHHHHHHCCCCCCEECCHHHCHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCEEEEEEEEC
TKEYKKFKKDRLITINDTELVGDTSLTKMLYLRQLASQYNPNKLSSLKDLLESTEDRVII
HHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEE
FYNFTEEMEQIKEVCGRLEKPISIVNGQTKDLENYKTKDNTVVLVQYQAGAMGLNLQLSN
EECCHHHHHHHHHHHHHHHCCHHHHCCCCCCHHCCCCCCCEEEEEEEECCCEEEEEEECC
KIIYYSLPLASELFEQSKKRTHRIGQTRTCMYWYLITKGCIEEQIFETLKERRDYTNKLF
EEEEEECCHHHHHHHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EELEG
HHHCC
>Mature Secondary Structure
MIICQKSKLQDWCEHFKTYYPEYNTFIYSKTREIPSNSVVIINYDLVWRRPKLSQIENFT
CEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEEEECCCCHHHHCCEE
LMLDESSMIKNPTSKRTKFILKLKAENVILLSGTPCGGKYEELHTQCKLLGWNISKKLYW
EEEECCHHHCCCCCHHEEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHH
QQYIKFINMDVGGFKVPKVVGYKNVERLKQKLHDHGSIFMKTEEVFDLPEQVEISVLIEN
HHHHHHHCCCCCCEECCHHHCHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCEEEEEEEEC
TKEYKKFKKDRLITINDTELVGDTSLTKMLYLRQLASQYNPNKLSSLKDLLESTEDRVII
HHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEE
FYNFTEEMEQIKEVCGRLEKPISIVNGQTKDLENYKTKDNTVVLVQYQAGAMGLNLQLSN
EECCHHHHHHHHHHHHHHHCCHHHHCCCCCCHHCCCCCCCEEEEEEEECCCEEEEEEECC
KIIYYSLPLASELFEQSKKRTHRIGQTRTCMYWYLITKGCIEEQIFETLKERRDYTNKLF
EEEEEECCHHHHHHHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EELEG
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 9353933 [H]