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The map label for this gene is yncD [H]

Identifier: 170752029

GI number: 170752029

Start: 5992272

End: 5994581

Strand: Reverse

Name: yncD [H]

Synonym: Mrad2831_5661

Alternate gene names: 170752029

Gene position: 5994581-5992272 (Counterclockwise)

Preceding gene: 170752030

Following gene: 170752028

Centisome position: 98.63

GC content: 70.52

Gene sequence:

>2310_bases
ATGACCTCCGACCAGACCGTCCTGTGCGGCGCCGCCCTCGCGCTCCTGCTCGCCGGAAGCCCCCTCCCCGCCCTCGGCCA
GACCGCCGTGACCCTCGAGGAACTCTCCGTGGAGGGCGAGGCCGCGCCCGCCGCGGGCCGGAGTGCCGCGCCGCCCTTCG
GCGTGGCGGCGCCGCCGGGCTCGGCGCCCGCGGTCATCGAGCACCCTGTCGGCGAGATCGTGACCGGTATCGGCCGGGAC
GACACGATCGCGAACCGCCCGGCAACCAGCATCGGATCGGTCCTGGTGAACAGCCCTGGCGTCACGGTGCGGCAGGGGAA
CGGCGGCCGCGACGTCGTCATCTCGATCCGCGGCAACAACGCCCGCTCCACCGGGGTGATCAAGAACACCGTCGTCCTGG
AGGACGGCTTCATCCTCACCCAGCCGGACGGCGCGTCGCGCTTCGATCTCACGGACCCCCGCGCCTACGGCCGGATCGAC
GTGTTCCGCGGGCCGCAATCGCCGCTCTTCGGCAACTACGCCACCGGGGGCGCCATCGCGTTCCGGACGCGCACCGGTCG
CGAGATCGACGGCTACGAGATCGGGGTGGATGCCGGCAGCTTCGGCTACCTCAGCAACTACTTCACCGTCGGCGGCGTCA
GCGGCCCGTTCGAGATCAGCCTGTTCGCCAGCGACGTCCACGCCAACGGCTACCAGGACCACGCCAGCTACGACACGCAG
ACCATCAATCTGCTCGCGAGCTACACTCCGACGCCGGACAACCGCTTCACCCTGAAGGTGATCAACAACACCCTCGACGC
CAACCTGCCCGCCCGCGCATCCCTGGCCCAGTACCGGATCAACCCGTACCAGCGCGGCTGCGCCGCCGCAGCGAGCGCGG
CCCCGGGCTGCACCACCTTCAACCTGTTCCGGAACGGGGCATTCGGCGCGACCGTGCCGGTGACGGCCGACGAGGGCGGC
TTCGGGCGCAACGACCGCCGGACCATCGTGGCCGCCCGCTGGGAGCACGACATCGACGCGTTCACCACCTGGCGCACGCA
GCTCGGGTTCGACGAGCGCAACTTCGATCAGCCGTTCTACACGACCTCGTCGCGGGGCTCTTACCCGTCCTGGAACTTCT
TGACCGACCTGACCCGGCGGGGCGACCTGTTCGGCCTGCCGGCAACCGGCTACGTCGCGCTGGCCTACAACACCATCGAC
AATCACATCACCACCTTCAACCGGGCCCCCTACGACGGCCCGCGCCTGGGGGCGCTGATCGGCGATCAGGCGGCGGTGCA
GTCGAATCTCGGCGGCCGGGCGCGGCTCGAGCTGGCGCTGTCGGATCAGTGGACCGGCATCCTCGGCCTGAGCGCCGAGA
CCACCTCGATCACCGGGCGCAACATCGCCTACGCGTACGCGGCGAGCGGCACGACGCGGACGGTGGCGGACGCGAACCGG
TCCTTCCTCAACGTCGCCCCCGAGCTGGCCCTGGTCTACCGGCCGGACGCGGCCTGGGCGCTGCGCGGCCGGGTCGCCAC
CGGCTACACCACGCCGGCCGCCAGCAACCTGTTCATCACCCCGGCCGGGCTGCCCGGAAACAACACGCAGCTCCAGACTC
AGGAGAATCTCGGCTTCGATCTCGGCGCCGAGTGGAGCCCGATGACCGATCTCCGCCTGAGCGTGACCGGGTTCTACGAG
TTCTTCCGCAACGAGCTGGTCTCGCAATCGCCGGGGGCCGGCCTCCTCGCCTACACGTTCAACGCGCCCGCCTCGGAGCA
TCGCGGCGTCGAGGTCGGCGCCGACTGGGCCTTCGCGCCCGGCTGGCGCGGGACGCTGGCCTACACGTTCGACGACCAGA
TCTACACCCGCTACACCGAGCAGCTCAGCGCCGGCAGCCTGACCCGGTCGTTCGACCGGGCGGGGAACCGGATCCCCGGG
GTTCCGGCCCACCAGCTCCTGGCCCGCCTCGGCTACGACGTGCCGAGCGGACCGCTCGCGGGTCTCGGCGCCTTCGTGGA
GACGGTCGTCCAGGGCGACTTCTACCTCGACAACGCCAACCTGCTGAAGGCCCCGGGCTTCGCGGTCGTCAACGCCAACC
TGCACTACGCCACGGAGCTGACCGGCGGCTACGCGAAGCGGCTCAGCCTGTACGTCGAGGTTCGCAACCTGTTCGACACG
ACCTACGTCGCCTCCGCGCAGAACCTCGCCAACGGGATTAGCGGCACCACCGGCCTCCAGAACGGCGCCGCCGTGCTGGC
GACCACCACGGGCTCGGTCTTCGCGGGTGCTCCGCGGAACATCGTCGGCGGCATGCGGCTGGCATTTTGA

Upstream 100 bases:

>100_bases
CCATCATCGTCGGCCAGCCCCGCGGGCCGCCCCGCTCCGCCTGATCGCCCTTCCTCCGGGTGGCGCCGCCGCTCGCCCCT
TCGATCAGACGAGACCTCCG

Downstream 100 bases:

>100_bases
TAACCGCGCGGGATCTCGCGCGTGGTGTCAAAGTGGAGCTTGCACTATGCTCCGGCGATCGATCGCAGGGGCCGGCCGAG
GCGCGCGGTCCGGTCCGCGC

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 769; Mature: 768

Protein sequence:

>769_residues
MTSDQTVLCGAALALLLAGSPLPALGQTAVTLEELSVEGEAAPAAGRSAAPPFGVAAPPGSAPAVIEHPVGEIVTGIGRD
DTIANRPATSIGSVLVNSPGVTVRQGNGGRDVVISIRGNNARSTGVIKNTVVLEDGFILTQPDGASRFDLTDPRAYGRID
VFRGPQSPLFGNYATGGAIAFRTRTGREIDGYEIGVDAGSFGYLSNYFTVGGVSGPFEISLFASDVHANGYQDHASYDTQ
TINLLASYTPTPDNRFTLKVINNTLDANLPARASLAQYRINPYQRGCAAAASAAPGCTTFNLFRNGAFGATVPVTADEGG
FGRNDRRTIVAARWEHDIDAFTTWRTQLGFDERNFDQPFYTTSSRGSYPSWNFLTDLTRRGDLFGLPATGYVALAYNTID
NHITTFNRAPYDGPRLGALIGDQAAVQSNLGGRARLELALSDQWTGILGLSAETTSITGRNIAYAYAASGTTRTVADANR
SFLNVAPELALVYRPDAAWALRGRVATGYTTPAASNLFITPAGLPGNNTQLQTQENLGFDLGAEWSPMTDLRLSVTGFYE
FFRNELVSQSPGAGLLAYTFNAPASEHRGVEVGADWAFAPGWRGTLAYTFDDQIYTRYTEQLSAGSLTRSFDRAGNRIPG
VPAHQLLARLGYDVPSGPLAGLGAFVETVVQGDFYLDNANLLKAPGFAVVNANLHYATELTGGYAKRLSLYVEVRNLFDT
TYVASAQNLANGISGTTGLQNGAAVLATTTGSVFAGAPRNIVGGMRLAF

Sequences:

>Translated_769_residues
MTSDQTVLCGAALALLLAGSPLPALGQTAVTLEELSVEGEAAPAAGRSAAPPFGVAAPPGSAPAVIEHPVGEIVTGIGRD
DTIANRPATSIGSVLVNSPGVTVRQGNGGRDVVISIRGNNARSTGVIKNTVVLEDGFILTQPDGASRFDLTDPRAYGRID
VFRGPQSPLFGNYATGGAIAFRTRTGREIDGYEIGVDAGSFGYLSNYFTVGGVSGPFEISLFASDVHANGYQDHASYDTQ
TINLLASYTPTPDNRFTLKVINNTLDANLPARASLAQYRINPYQRGCAAAASAAPGCTTFNLFRNGAFGATVPVTADEGG
FGRNDRRTIVAARWEHDIDAFTTWRTQLGFDERNFDQPFYTTSSRGSYPSWNFLTDLTRRGDLFGLPATGYVALAYNTID
NHITTFNRAPYDGPRLGALIGDQAAVQSNLGGRARLELALSDQWTGILGLSAETTSITGRNIAYAYAASGTTRTVADANR
SFLNVAPELALVYRPDAAWALRGRVATGYTTPAASNLFITPAGLPGNNTQLQTQENLGFDLGAEWSPMTDLRLSVTGFYE
FFRNELVSQSPGAGLLAYTFNAPASEHRGVEVGADWAFAPGWRGTLAYTFDDQIYTRYTEQLSAGSLTRSFDRAGNRIPG
VPAHQLLARLGYDVPSGPLAGLGAFVETVVQGDFYLDNANLLKAPGFAVVNANLHYATELTGGYAKRLSLYVEVRNLFDT
TYVASAQNLANGISGTTGLQNGAAVLATTTGSVFAGAPRNIVGGMRLAF
>Mature_768_residues
TSDQTVLCGAALALLLAGSPLPALGQTAVTLEELSVEGEAAPAAGRSAAPPFGVAAPPGSAPAVIEHPVGEIVTGIGRDD
TIANRPATSIGSVLVNSPGVTVRQGNGGRDVVISIRGNNARSTGVIKNTVVLEDGFILTQPDGASRFDLTDPRAYGRIDV
FRGPQSPLFGNYATGGAIAFRTRTGREIDGYEIGVDAGSFGYLSNYFTVGGVSGPFEISLFASDVHANGYQDHASYDTQT
INLLASYTPTPDNRFTLKVINNTLDANLPARASLAQYRINPYQRGCAAAASAAPGCTTFNLFRNGAFGATVPVTADEGGF
GRNDRRTIVAARWEHDIDAFTTWRTQLGFDERNFDQPFYTTSSRGSYPSWNFLTDLTRRGDLFGLPATGYVALAYNTIDN
HITTFNRAPYDGPRLGALIGDQAAVQSNLGGRARLELALSDQWTGILGLSAETTSITGRNIAYAYAASGTTRTVADANRS
FLNVAPELALVYRPDAAWALRGRVATGYTTPAASNLFITPAGLPGNNTQLQTQENLGFDLGAEWSPMTDLRLSVTGFYEF
FRNELVSQSPGAGLLAYTFNAPASEHRGVEVGADWAFAPGWRGTLAYTFDDQIYTRYTEQLSAGSLTRSFDRAGNRIPGV
PAHQLLARLGYDVPSGPLAGLGAFVETVVQGDFYLDNANLLKAPGFAVVNANLHYATELTGGYAKRLSLYVEVRNLFDTT
YVASAQNLANGISGTTGLQNGAAVLATTTGSVFAGAPRNIVGGMRLAF

Specific function: Probable receptor, tonB-dependent [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=678, Percent_Identity=24.9262536873156, Blast_Score=116, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 81392; Mature: 81261

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSDQTVLCGAALALLLAGSPLPALGQTAVTLEELSVEGEAAPAAGRSAAPPFGVAAPPG
CCCCCEEHHHHHHHHHHCCCCCCCCCCCEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
SAPAVIEHPVGEIVTGIGRDDTIANRPATSIGSVLVNSPGVTVRQGNGGRDVVISIRGNN
CCCCEEECCHHHHHHCCCCCCCCCCCCCHHHHHHEECCCCEEEEECCCCCEEEEEEECCC
ARSTGVIKNTVVLEDGFILTQPDGASRFDLTDPRAYGRIDVFRGPQSPLFGNYATGGAIA
CCCCCEEEEEEEEECCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEE
FRTRTGREIDGYEIGVDAGSFGYLSNYFTVGGVSGPFEISLFASDVHANGYQDHASYDTQ
EEECCCCCCCCEEEECCCCCCCHHHCEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCE
TINLLASYTPTPDNRFTLKVINNTLDANLPARASLAQYRINPYQRGCAAAASAAPGCTTF
EEEEEEECCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCEEE
NLFRNGAFGATVPVTADEGGFGRNDRRTIVAARWEHDIDAFTTWRTQLGFDERNFDQPFY
EHHHCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCHHEEHHHHCCCCCCCCCCCCE
TTSSRGSYPSWNFLTDLTRRGDLFGLPATGYVALAYNTIDNHITTFNRAPYDGPRLGALI
ECCCCCCCCCCHHHHHHHHCCCEEECCCCCEEEEEEECCCCCEEECCCCCCCCCCCCEEE
GDQAAVQSNLGGRARLELALSDQWTGILGLSAETTSITGRNIAYAYAASGTTRTVADANR
CCHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCCEECCCCEEEEEECCCCEEEHHHCCC
SFLNVAPELALVYRPDAAWALRGRVATGYTTPAASNLFITPAGLPGNNTQLQTQENLGFD
HHEECCCCEEEEECCCCCEEEECEEEECCCCCCCCCEEEEECCCCCCCCEEEECCCCCCC
LGAEWSPMTDLRLSVTGFYEFFRNELVSQSPGAGLLAYTFNAPASEHRGVEVGADWAFAP
CCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEECCCEEECC
GWRGTLAYTFDDQIYTRYTEQLSAGSLTRSFDRAGNRIPGVPAHQLLARLGYDVPSGPLA
CCCCEEEEEECCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHH
GLGAFVETVVQGDFYLDNANLLKAPGFAVVNANLHYATELTGGYAKRLSLYVEVRNLFDT
HHHHHHHHHHCCCEEECCCCEEECCCEEEEECCEEEEEECCCCHHHHEEEEEEEHHHHHH
TYVASAQNLANGISGTTGLQNGAAVLATTTGSVFAGAPRNIVGGMRLAF
HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCEECCCCHHHHCCEEECC
>Mature Secondary Structure 
TSDQTVLCGAALALLLAGSPLPALGQTAVTLEELSVEGEAAPAAGRSAAPPFGVAAPPG
CCCCEEHHHHHHHHHHCCCCCCCCCCCEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
SAPAVIEHPVGEIVTGIGRDDTIANRPATSIGSVLVNSPGVTVRQGNGGRDVVISIRGNN
CCCCEEECCHHHHHHCCCCCCCCCCCCCHHHHHHEECCCCEEEEECCCCCEEEEEEECCC
ARSTGVIKNTVVLEDGFILTQPDGASRFDLTDPRAYGRIDVFRGPQSPLFGNYATGGAIA
CCCCCEEEEEEEEECCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEE
FRTRTGREIDGYEIGVDAGSFGYLSNYFTVGGVSGPFEISLFASDVHANGYQDHASYDTQ
EEECCCCCCCCEEEECCCCCCCHHHCEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCE
TINLLASYTPTPDNRFTLKVINNTLDANLPARASLAQYRINPYQRGCAAAASAAPGCTTF
EEEEEEECCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCEEE
NLFRNGAFGATVPVTADEGGFGRNDRRTIVAARWEHDIDAFTTWRTQLGFDERNFDQPFY
EHHHCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCHHEEHHHHCCCCCCCCCCCCE
TTSSRGSYPSWNFLTDLTRRGDLFGLPATGYVALAYNTIDNHITTFNRAPYDGPRLGALI
ECCCCCCCCCCHHHHHHHHCCCEEECCCCCEEEEEEECCCCCEEECCCCCCCCCCCCEEE
GDQAAVQSNLGGRARLELALSDQWTGILGLSAETTSITGRNIAYAYAASGTTRTVADANR
CCHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCCEECCCCEEEEEECCCCEEEHHHCCC
SFLNVAPELALVYRPDAAWALRGRVATGYTTPAASNLFITPAGLPGNNTQLQTQENLGFD
HHEECCCCEEEEECCCCCEEEECEEEECCCCCCCCCEEEEECCCCCCCCEEEECCCCCCC
LGAEWSPMTDLRLSVTGFYEFFRNELVSQSPGAGLLAYTFNAPASEHRGVEVGADWAFAP
CCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEECCCEEECC
GWRGTLAYTFDDQIYTRYTEQLSAGSLTRSFDRAGNRIPGVPAHQLLARLGYDVPSGPLA
CCCCEEEEEECCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHH
GLGAFVETVVQGDFYLDNANLLKAPGFAVVNANLHYATELTGGYAKRLSLYVEVRNLFDT
HHHHHHHHHHCCCEEECCCCEEECCCEEEEECCEEEEEECCCCHHHHEEEEEEEHHHHHH
TYVASAQNLANGISGTTGLQNGAAVLATTTGSVFAGAPRNIVGGMRLAF
HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCEECCCCHHHHCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]