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The map label for this gene is ybiS [H]

Identifier: 170751970

GI number: 170751970

Start: 5931359

End: 5932006

Strand: Reverse

Name: ybiS [H]

Synonym: Mrad2831_5602

Alternate gene names: 170751970

Gene position: 5932006-5931359 (Counterclockwise)

Preceding gene: 170751971

Following gene: 170751967

Centisome position: 97.6

GC content: 67.9

Gene sequence:

>648_bases
ATGAAGACCACGGTCACCGCACTCGCCGCGCTCCTCGGCGTGTCTGTTCTTGCCGCCACGCCCGTTCTCGCCGCCTCGTC
GTACGATCCCTTCGGCACGGACAATGCCGACGAGTACTACTCCGATCAGGGACAGTACGGTTACCAGGGCACTTACGCCC
CGGGCTACGGCCAGGGCGTGCAGGCCGCGCCGCAGGCGCAGGTCCAGCCGATCCCCCGTGAGATCGTGGCGTTCAACGGA
CCCTACGCGCCCGGCACGATCGTGGTCTCCACCGCCGAGCGGCGCCTGTACTACGTGCTCGGCAACGGCGAGGCGATCCG
CTACGGCGTCGGCGTCGGCCGTCCGGGCTTCAGCTGGAGCGGCACCAACAAGATCACCGCCAAGCGCGAGTGGCCGTCGT
GGACGCCCCCGAAGGCCATGATCGCCCGTCGTCCCGACCTGCCGCGCTACATGGCGGGCGGCATCGAGAACCCCCTCGGC
GCCCGAGCCATGTATATCGGCAGCACTGAGTACCGCATTCACGGCTCCAACGAGCCGGACACGATCGGTCAGGCGGTGTC
GTCGGGCTGCATCCGGATGACGAACGAGGACGTCACCGACCTGTACGACCGCGTGAAGGTCGGCGCCAAGGTCGTCGTCC
TGAACTGA

Upstream 100 bases:

>100_bases
TGCGTATTCCGCCGGAGAGCGAATTCTTGGCGGGTGTATGGAACTGCCTGCCTATGCTCACGCTTGTAATGGCAAAGGTT
ATTGCACAGGTAGGCCACTC

Downstream 100 bases:

>100_bases
GGACGCGGCGCGGGAATGCTCGCGCCCAGGTCCGCCTGCGCCGCACGGGCCGCGTCATCCGAAAGGGGGGCGCGGCCCGT
CGCCGTCGAGACCGCGTGCA

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MKTTVTALAALLGVSVLAATPVLAASSYDPFGTDNADEYYSDQGQYGYQGTYAPGYGQGVQAAPQAQVQPIPREIVAFNG
PYAPGTIVVSTAERRLYYVLGNGEAIRYGVGVGRPGFSWSGTNKITAKREWPSWTPPKAMIARRPDLPRYMAGGIENPLG
ARAMYIGSTEYRIHGSNEPDTIGQAVSSGCIRMTNEDVTDLYDRVKVGAKVVVLN

Sequences:

>Translated_215_residues
MKTTVTALAALLGVSVLAATPVLAASSYDPFGTDNADEYYSDQGQYGYQGTYAPGYGQGVQAAPQAQVQPIPREIVAFNG
PYAPGTIVVSTAERRLYYVLGNGEAIRYGVGVGRPGFSWSGTNKITAKREWPSWTPPKAMIARRPDLPRYMAGGIENPLG
ARAMYIGSTEYRIHGSNEPDTIGQAVSSGCIRMTNEDVTDLYDRVKVGAKVVVLN
>Mature_215_residues
MKTTVTALAALLGVSVLAATPVLAASSYDPFGTDNADEYYSDQGQYGYQGTYAPGYGQGVQAAPQAQVQPIPREIVAFNG
PYAPGTIVVSTAERRLYYVLGNGEAIRYGVGVGRPGFSWSGTNKITAKREWPSWTPPKAMIARRPDLPRYMAGGIENPLG
ARAMYIGSTEYRIHGSNEPDTIGQAVSSGCIRMTNEDVTDLYDRVKVGAKVVVLN

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=195, Percent_Identity=32.3076923076923, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788299, Length=190, Percent_Identity=34.7368421052632, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1787968, Length=153, Percent_Identity=34.640522875817, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787356, Length=139, Percent_Identity=34.5323741007194, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 23046; Mature: 23046

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTTVTALAALLGVSVLAATPVLAASSYDPFGTDNADEYYSDQGQYGYQGTYAPGYGQGV
CCHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
QAAPQAQVQPIPREIVAFNGPYAPGTIVVSTAERRLYYVLGNGEAIRYGVGVGRPGFSWS
CCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCEEEEEEECCCEEEEECCCCCCCCCCC
GTNKITAKREWPSWTPPKAMIARRPDLPRYMAGGIENPLGARAMYIGSTEYRIHGSNEPD
CCCEEEECCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCEEEEECCCEEEEECCCCCH
TIGQAVSSGCIRMTNEDVTDLYDRVKVGAKVVVLN
HHHHHHHCCEEEECCCCHHHHHHHHHCCEEEEEEC
>Mature Secondary Structure
MKTTVTALAALLGVSVLAATPVLAASSYDPFGTDNADEYYSDQGQYGYQGTYAPGYGQGV
CCHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
QAAPQAQVQPIPREIVAFNGPYAPGTIVVSTAERRLYYVLGNGEAIRYGVGVGRPGFSWS
CCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCEEEEEEECCCEEEEECCCCCCCCCCC
GTNKITAKREWPSWTPPKAMIARRPDLPRYMAGGIENPLGARAMYIGSTEYRIHGSNEPD
CCCEEEECCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCEEEEECCCEEEEECCCCCH
TIGQAVSSGCIRMTNEDVTDLYDRVKVGAKVVVLN
HHHHHHHCCEEEECCCCHHHHHHHHHCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]