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The map label for this gene is phyR [H]

Identifier: 170751389

GI number: 170751389

Start: 5329573

End: 5330376

Strand: Direct

Name: phyR [H]

Synonym: Mrad2831_5008

Alternate gene names: 170751389

Gene position: 5329573-5330376 (Clockwise)

Preceding gene: 170751387

Following gene: 170751390

Centisome position: 87.69

GC content: 68.03

Gene sequence:

>804_bases
ATGTCGACATCGCAACTCGTGGTACAGCACCTGCCGTACCTGCGCCGCTACGCGCGCGCGCTCACGGGTAGCCAAGTGGC
GGGTGACGCGTACGTCGCCGCCACCCTGGAGACCCTCGTCAACGAGCCGGACACGCTCGGTCGCAGCACCAACATCAAGG
CCGACCTGTTCCGCGTCTTCACGCGGATCTGGAACTCGCTCTCGGTCAACGGCCGCAGCGAGCAGGTCCAGCACGACCTG
CCTGCGGAGGTGCGCCTCGGTCAGATCACGCCGCTGCCGCGCCAGGCCTTCCTGCTCTCCTGCCTCGAGGGCTTCTCGGA
GGAGGACGCGGCCATCATCCTCGGCGTGGACGTGTCCGAGGTTCGCGACCTCGTCGACGAGGCCGGCCGCGAGCTCGCCG
CCGACATGGCGACCGAGATCCTCATCATCGAGGACGAGCCCCTGATCGCGATGGATCTGGAGGCTCTGGTCGAGGGTCTC
GGCCACAACGTCATCGGCGTTGCCCGCACCCGTACCGAGGCGATCAAGATCGCCGGGGAGGGCAAGCGTCCCGGCCTGAT
CCTGGCCGACATTCAGCTCGCCGACGGCTCCTCCGGCCTCGACGCGGTGAACGACCTCCTGAAGTCCTTCGAGGTGCCGG
TGATCTTCATCACCGCCTATCCGGAGCGCTTCCTCACCGGCGAGCGGCCCGAGCCGGCCTTCCTCATCGCCAAGCCGTTC
CAGCCCGCCAACGTCTCGGCGGTGATCAGCCAGGCGCTGTTCTTCCAGCAGACCGCCCGTCGGCGCGAAGCCAAGACGGC
CTGA

Upstream 100 bases:

>100_bases
GGCGGTAGGCTGCGCAGGACACAGAGCCGGCCCCGGCAGGCCCTCGGTAACGGATCGAGGCGCTCGCGGCCGGGCAACAC
GGCGAGGCACAGGGGATCGA

Downstream 100 bases:

>100_bases
GGCCGGCCTGTCGGGTCGCGCCCGGGGTTCGCCCGGGCCGCCCGCGACCGGGAACGGTGGCAACAAAAAACCCCGGCGCG
AGCCGGGGTTTTTTGTTGCC

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MSTSQLVVQHLPYLRRYARALTGSQVAGDAYVAATLETLVNEPDTLGRSTNIKADLFRVFTRIWNSLSVNGRSEQVQHDL
PAEVRLGQITPLPRQAFLLSCLEGFSEEDAAIILGVDVSEVRDLVDEAGRELAADMATEILIIEDEPLIAMDLEALVEGL
GHNVIGVARTRTEAIKIAGEGKRPGLILADIQLADGSSGLDAVNDLLKSFEVPVIFITAYPERFLTGERPEPAFLIAKPF
QPANVSAVISQALFFQQTARRREAKTA

Sequences:

>Translated_267_residues
MSTSQLVVQHLPYLRRYARALTGSQVAGDAYVAATLETLVNEPDTLGRSTNIKADLFRVFTRIWNSLSVNGRSEQVQHDL
PAEVRLGQITPLPRQAFLLSCLEGFSEEDAAIILGVDVSEVRDLVDEAGRELAADMATEILIIEDEPLIAMDLEALVEGL
GHNVIGVARTRTEAIKIAGEGKRPGLILADIQLADGSSGLDAVNDLLKSFEVPVIFITAYPERFLTGERPEPAFLIAKPF
QPANVSAVISQALFFQQTARRREAKTA
>Mature_266_residues
STSQLVVQHLPYLRRYARALTGSQVAGDAYVAATLETLVNEPDTLGRSTNIKADLFRVFTRIWNSLSVNGRSEQVQHDLP
AEVRLGQITPLPRQAFLLSCLEGFSEEDAAIILGVDVSEVRDLVDEAGRELAADMATEILIIEDEPLIAMDLEALVEGLG
HNVIGVARTRTEAIKIAGEGKRPGLILADIQLADGSSGLDAVNDLLKSFEVPVIFITAYPERFLTGERPEPAFLIAKPFQ
PANVSAVISQALFFQQTARRREAKTA

Specific function: Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However it is not known whether this regulation is direct or indirect. Also induces several de

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR014605
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 29094; Mature: 28962

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSQLVVQHLPYLRRYARALTGSQVAGDAYVAATLETLVNEPDTLGRSTNIKADLFRVF
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHH
TRIWNSLSVNGRSEQVQHDLPAEVRLGQITPLPRQAFLLSCLEGFSEEDAAIILGVDVSE
HHHHHHCCCCCCHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEECCHHH
VRDLVDEAGRELAADMATEILIIEDEPLIAMDLEALVEGLGHNVIGVARTRTEAIKIAGE
HHHHHHHHHHHHHHHHHCEEEEECCCCEEEHHHHHHHHHCCCCEEEEEHHHHHEEEEECC
GKRPGLILADIQLADGSSGLDAVNDLLKSFEVPVIFITAYPERFLTGERPEPAFLIAKPF
CCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHCCCCCCCCEEEECCC
QPANVSAVISQALFFQQTARRREAKTA
CCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
STSQLVVQHLPYLRRYARALTGSQVAGDAYVAATLETLVNEPDTLGRSTNIKADLFRVF
CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHH
TRIWNSLSVNGRSEQVQHDLPAEVRLGQITPLPRQAFLLSCLEGFSEEDAAIILGVDVSE
HHHHHHCCCCCCHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEECCHHH
VRDLVDEAGRELAADMATEILIIEDEPLIAMDLEALVEGLGHNVIGVARTRTEAIKIAGE
HHHHHHHHHHHHHHHHHCEEEEECCCCEEEHHHHHHHHHCCCCEEEEEHHHHHEEEEECC
GKRPGLILADIQLADGSSGLDAVNDLLKSFEVPVIFITAYPERFLTGERPEPAFLIAKPF
CCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHCCCCCCCCEEEECCC
QPANVSAVISQALFFQQTARRREAKTA
CCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA