Click here to switch to the map view.

The map label for this gene is rbcR [H]

Identifier: 170751208

GI number: 170751208

Start: 5154115

End: 5155026

Strand: Direct

Name: rbcR [H]

Synonym: Mrad2831_4825

Alternate gene names: 170751208

Gene position: 5154115-5155026 (Clockwise)

Preceding gene: 170751207

Following gene: 170751209

Centisome position: 84.8

GC content: 73.9

Gene sequence:

>912_bases
GTGAACGACCGCGCCCTGCGCTACCTGCTGGCCGTCGTGCGCGCGGGCTCTGTCCGGGCGGCCGCCGAGGTGCTGAACGT
CGCCGCCTCGGCGGTGAGCCGGCAGATCATCGAACTCGAGGCGCAGGTCGGCGAGACCCTGCTCGAGCGCCTGCCCCGGG
GTGTCGTCCCCACCGAGGCCGGCCGTCTGGTCGCCGCGCACGCGCAGCGGCAGGCCGACGAGGCGGCGCTGCTGGAGGAC
CAGCTGAAGCGCCTGCGCGGGGTGCAGCGGGGCACGGTCAGCCTGCGCTGCGGCGCCGGCTTCCTGATCGACCTCCTCGA
CAATGCACTCGCCGGGTTCGCGCAGGACCATCCGGGCATCGCCTATCAGGTCGAGATCGGCACCACCGACGGGATCCTCG
CGGCCATAGCCCGGGGGGACGCGGATATCGGCCTCGTCTACAACCCGCCCGCGCATCCGGATGTCCGCGGAATCGTCACC
GCCCGGCAGCCGCTGCTCGCCATCCTGCCGAAAAACCATCCCCTCGCGGATGGATCGGCGCCGGTTCCGCTGCGCAGCTT
CGCCACCGAGCCCGCCGCCCTCCTGCCGCCCGACCACGGGGTGCGCCAGCTGATCGGCCGCGTCGAGGCGGATGGCGGCT
TCCGGCTGGTGCCGCGGCTGGAGACGGCGTCCTTCGAGCTGCATCGCCGCTTCGTCATGGCCGCGATGGGCGTCGCCTTC
CTGCCCCGCTTCGTGGTCGCGGCCGAGCTGCGGGCCGACCTCCTCGACGCTGTGCCGCTGCGCGACAGCATCCTGTCCGA
GGCGACCGCCCACCTCGTCATCCGGGCCGGGCGACGGCTGCCCGAGGGCGCGGCGCGCCTGCTAGGCTGGCTGGCCGACC
ACATGGTGGCGTTCCGTCCGCCACCGGCCTGA

Upstream 100 bases:

>100_bases
TGCCGCAGGTGATCGTCGAGCGCCAGGAACCGGTGCTCGTCGTGGCGCGGGGCGCCGTCGCGGTCGACCGGCGCGGCGCG
GCAGACGGGAACCCGCCGCC

Downstream 100 bases:

>100_bases
CCCTACCGTGCTGGATTTCCGCACGTTACGTGCAAAAATCCATGATTGTAGCAACGCTCGTTTGCCGAGATCATCCTCCC
GCACGGTGAGGACGGATCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MNDRALRYLLAVVRAGSVRAAAEVLNVAASAVSRQIIELEAQVGETLLERLPRGVVPTEAGRLVAAHAQRQADEAALLED
QLKRLRGVQRGTVSLRCGAGFLIDLLDNALAGFAQDHPGIAYQVEIGTTDGILAAIARGDADIGLVYNPPAHPDVRGIVT
ARQPLLAILPKNHPLADGSAPVPLRSFATEPAALLPPDHGVRQLIGRVEADGGFRLVPRLETASFELHRRFVMAAMGVAF
LPRFVVAAELRADLLDAVPLRDSILSEATAHLVIRAGRRLPEGAARLLGWLADHMVAFRPPPA

Sequences:

>Translated_303_residues
MNDRALRYLLAVVRAGSVRAAAEVLNVAASAVSRQIIELEAQVGETLLERLPRGVVPTEAGRLVAAHAQRQADEAALLED
QLKRLRGVQRGTVSLRCGAGFLIDLLDNALAGFAQDHPGIAYQVEIGTTDGILAAIARGDADIGLVYNPPAHPDVRGIVT
ARQPLLAILPKNHPLADGSAPVPLRSFATEPAALLPPDHGVRQLIGRVEADGGFRLVPRLETASFELHRRFVMAAMGVAF
LPRFVVAAELRADLLDAVPLRDSILSEATAHLVIRAGRRLPEGAARLLGWLADHMVAFRPPPA
>Mature_303_residues
MNDRALRYLLAVVRAGSVRAAAEVLNVAASAVSRQIIELEAQVGETLLERLPRGVVPTEAGRLVAAHAQRQADEAALLED
QLKRLRGVQRGTVSLRCGAGFLIDLLDNALAGFAQDHPGIAYQVEIGTTDGILAAIARGDADIGLVYNPPAHPDVRGIVT
ARQPLLAILPKNHPLADGSAPVPLRSFATEPAALLPPDHGVRQLIGRVEADGGFRLVPRLETASFELHRRFVMAAMGVAF
LPRFVVAAELRADLLDAVPLRDSILSEATAHLVIRAGRRLPEGAARLLGWLADHMVAFRPPPA

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=202, Percent_Identity=31.1881188118812, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI157672245, Length=240, Percent_Identity=25.8333333333333, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788481, Length=259, Percent_Identity=25.4826254826255, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788297, Length=80, Percent_Identity=43.75, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790399, Length=262, Percent_Identity=27.4809160305344, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081904, Length=261, Percent_Identity=26.8199233716475, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1788887, Length=181, Percent_Identity=31.4917127071823, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787601, Length=147, Percent_Identity=27.2108843537415, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32344; Mature: 32344

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDRALRYLLAVVRAGSVRAAAEVLNVAASAVSRQIIELEAQVGETLLERLPRGVVPTEA
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GRLVAAHAQRQADEAALLEDQLKRLRGVQRGTVSLRCGAGFLIDLLDNALAGFAQDHPGI
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCE
AYQVEIGTTDGILAAIARGDADIGLVYNPPAHPDVRGIVTARQPLLAILPKNHPLADGSA
EEEEEECCCCHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCC
PVPLRSFATEPAALLPPDHGVRQLIGRVEADGGFRLVPRLETASFELHRRFVMAAMGVAF
CCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH
LPRFVVAAELRADLLDAVPLRDSILSEATAHLVIRAGRRLPEGAARLLGWLADHMVAFRP
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
PPA
CCC
>Mature Secondary Structure
MNDRALRYLLAVVRAGSVRAAAEVLNVAASAVSRQIIELEAQVGETLLERLPRGVVPTEA
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GRLVAAHAQRQADEAALLEDQLKRLRGVQRGTVSLRCGAGFLIDLLDNALAGFAQDHPGI
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCE
AYQVEIGTTDGILAAIARGDADIGLVYNPPAHPDVRGIVTARQPLLAILPKNHPLADGSA
EEEEEECCCCHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCC
PVPLRSFATEPAALLPPDHGVRQLIGRVEADGGFRLVPRLETASFELHRRFVMAAMGVAF
CCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH
LPRFVVAAELRADLLDAVPLRDSILSEATAHLVIRAGRRLPEGAARLLGWLADHMVAFRP
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
PPA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]