Click here to switch to the map view.

The map label for this gene is ydcN [C]

Identifier: 170751194

GI number: 170751194

Start: 5138129

End: 5138734

Strand: Reverse

Name: ydcN [C]

Synonym: Mrad2831_4811

Alternate gene names: 170751194

Gene position: 5138734-5138129 (Counterclockwise)

Preceding gene: 170751195

Following gene: 170751193

Centisome position: 84.55

GC content: 67.82

Gene sequence:

>606_bases
ATGCTGAATACCGGTTCGAACGCGCCGACCGAGGACGGCAAGAGCCTGGAACGGGCCCTCGGGCACCAGGTCCGCGCCCT
GCGCCGCGAGCGGGAACTCTCAGTCGCCGATCTCAGCGCGGCGGCCGGCATCTCGCCCGGCATGGTCTCGAAGATCGAGA
ACGGGCAGATCTCGCCGTCGCTCGCCACGGTCAACGCGGTGGCGAAGGCGCTCAACGTGCCGATCACCACCCTCTTCGCC
GCCTTCGAGGAGAGCCGCGACTGCTCCTACGTGAAGAAGGGCACCGGGGTCGTCATCGAGCGGCGCGGCACGAAGGTCGG
GCACATCTACGAACTGCTCGGCGCCGGCATCCGCGGCGAGACCGTGCTCGAGCCCTACCTCATCACCCTGGAGGAGGATG
CCGAGGTCTATACCGGCTTCCGCCACGCGGGCATCGAGTTCATCTACATGCTGAGCGGCGAGGTGAGCTACCGCCACGCC
GGGCAGGATTACCACCTCAAGCCGGGCGACGCGCTCCTGTTCGACGCCGAGGCGCTGCACGGGCCGCAGGCGCTGATCAA
GCGGCCGATGACCTACCTGTCGATCATCGCCTATCCCCGGCAGTGA

Upstream 100 bases:

>100_bases
CGCGCGGCGGGCCTGCGGAACGCGGTGCAATCGGCTATGGACCTGGATCGACCGGCCGGGACGCCTCCGGCCGCGGGGTC
TTCCAGTTCGCGGGCCTTCC

Downstream 100 bases:

>100_bases
ACGCGGCGCGCCCGCCTGCCCGACCTCGCCGCAGCCGGTGGCTAATTTCTCGGCAGGAAATTTTAGTGATCCTCAGTTGA
CGAATCCGGGACGCCGTGCG

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; XRE Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Cupin 2 Domain-Containing Protein; MerR Family Transcriptional Regulator; Transcriptional Regulator Protein; Cupin 2 Conserved Barrel Domain Protein; HTH-Type Transcriptional Regulator; Transcriptional Regulator Merr Family; Helix-Turn-Helix Domain Protein; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator MerR Family; Cupin Domain Protein; Epoxidase; Cupin 2 Barrel Domain-Containing Protein; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Xre Family xin-Antitoxin System Antitoxin Component; Helix-Turn-Helix Protein; XRE Family-Like Protein

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MLNTGSNAPTEDGKSLERALGHQVRALRRERELSVADLSAAAGISPGMVSKIENGQISPSLATVNAVAKALNVPITTLFA
AFEESRDCSYVKKGTGVVIERRGTKVGHIYELLGAGIRGETVLEPYLITLEEDAEVYTGFRHAGIEFIYMLSGEVSYRHA
GQDYHLKPGDALLFDAEALHGPQALIKRPMTYLSIIAYPRQ

Sequences:

>Translated_201_residues
MLNTGSNAPTEDGKSLERALGHQVRALRRERELSVADLSAAAGISPGMVSKIENGQISPSLATVNAVAKALNVPITTLFA
AFEESRDCSYVKKGTGVVIERRGTKVGHIYELLGAGIRGETVLEPYLITLEEDAEVYTGFRHAGIEFIYMLSGEVSYRHA
GQDYHLKPGDALLFDAEALHGPQALIKRPMTYLSIIAYPRQ
>Mature_201_residues
MLNTGSNAPTEDGKSLERALGHQVRALRRERELSVADLSAAAGISPGMVSKIENGQISPSLATVNAVAKALNVPITTLFA
AFEESRDCSYVKKGTGVVIERRGTKVGHIYELLGAGIRGETVLEPYLITLEEDAEVYTGFRHAGIEFIYMLSGEVSYRHA
GQDYHLKPGDALLFDAEALHGPQALIKRPMTYLSIIAYPRQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21843; Mature: 21843

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNTGSNAPTEDGKSLERALGHQVRALRRERELSVADLSAAAGISPGMVSKIENGQISPS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHCCCCCCCCH
LATVNAVAKALNVPITTLFAAFEESRDCSYVKKGTGVVIERRGTKVGHIYELLGAGIRGE
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHCCCCCEEEEECCCCHHHHHHHHCCCCCCC
TVLEPYLITLEEDAEVYTGFRHAGIEFIYMLSGEVSYRHAGQDYHLKPGDALLFDAEALH
EEECCEEEEEECCCHHHHHHHHCCEEEEEEECCCEEEEECCCCCEECCCCEEEEEHHHHC
GPQALIKRPMTYLSIIAYPRQ
CCHHHHHCCHHHHHHEECCCC
>Mature Secondary Structure
MLNTGSNAPTEDGKSLERALGHQVRALRRERELSVADLSAAAGISPGMVSKIENGQISPS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHCCCCCCCCH
LATVNAVAKALNVPITTLFAAFEESRDCSYVKKGTGVVIERRGTKVGHIYELLGAGIRGE
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHCCCCCEEEEECCCCHHHHHHHHCCCCCCC
TVLEPYLITLEEDAEVYTGFRHAGIEFIYMLSGEVSYRHAGQDYHLKPGDALLFDAEALH
EEECCEEEEEECCCHHHHHHHHCCEEEEEEECCCEEEEECCCCCEECCCCEEEEEHHHHC
GPQALIKRPMTYLSIIAYPRQ
CCHHHHHCCHHHHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA