Click here to switch to the map view.

The map label for this gene is ybiS [H]

Identifier: 170751155

GI number: 170751155

Start: 5085777

End: 5086580

Strand: Direct

Name: ybiS [H]

Synonym: Mrad2831_4771

Alternate gene names: 170751155

Gene position: 5085777-5086580 (Clockwise)

Preceding gene: 170751154

Following gene: 170751157

Centisome position: 83.68

GC content: 67.79

Gene sequence:

>804_bases
ATGACAGGAGACGACTGCGAAGCCATGATGCCTGATCTCTGCAATGGTCTGCGCTCGGCCCGTGCCCGAGCGCTGCGCGG
CGCTTCCGTGCTGTCGCTCACGCTGCTGGCGGCGGGCTGCATGGCGACCGACCGTGATGTTGGGGCGATCGCGAGCGTCG
CGCCGGTGCACCCGAGCTTCCTCGCCATGTACGCGGCGAAGCCCGCCGAACGCTTCCCGCTGCCGGCGACCGACATCAGC
GCGGTCGATCCGCGCTACTTCCGCCAGGAGGTCGCATACCCGCGCAGCGAGCCGCCGGGTACCGTGGTCGTCGATCCGGG
CAACAAGTTTCTCTACCTCGTACGCGAGAACGGCAGGGCCCTGCGTTACGGGGTGGGTGTCGGCAAGGCCGGTCTCGCGT
GGAACGGGACCGCCGAGATCAAGCGCAAAGCGGAATGGCCGCGCTGGACGCCGACCGCCGACATGATCCGGCGCGAGCCC
GAGCGCAACGGCCCTTGGCGCAACGGCATGGCGCCGGGCCTGACGAACCCGCTCGGCCCGCGCGCGCTCTACCTGTTCGA
CGGCGATCGGGACACCCTCTACCGCATTCACGGCACGACCGAGCCGCAAACCATCGGCACGAACGTCTCGTCCGGTTGCA
TCCGGATGTTTAACCAGGACATCATCAACCTCTACGAGCGCGTGCCCGTGAATACGAAGGTCGTGGTGCTGCGGCCCGAC
GCGCACGTCGAGCCGCTAGAGGCCTTCGCGACAGCGCGCGAAGAAGAGGGGCCTGGACATCTCAGTGTCGTTCCGAAGCC
TTGA

Upstream 100 bases:

>100_bases
TCGCATCATTCGAAGAAACGATCTCAGAAAATCGGCCTATAGCTTCGTGATCGCTGCGACTCCGGCGCCAAGGTGCCGGC
TGTCGAAGAAGCATGACGCG

Downstream 100 bases:

>100_bases
TGATGCAGGGATACATTACGTATCCGAAAGCCGTCATTCTTGAGGAGGAAGGTTCGCTCTTGCACCGATCCTTCTTCGTG
AGCGCCCGCCACACCGATCG

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MTGDDCEAMMPDLCNGLRSARARALRGASVLSLTLLAAGCMATDRDVGAIASVAPVHPSFLAMYAAKPAERFPLPATDIS
AVDPRYFRQEVAYPRSEPPGTVVVDPGNKFLYLVRENGRALRYGVGVGKAGLAWNGTAEIKRKAEWPRWTPTADMIRREP
ERNGPWRNGMAPGLTNPLGPRALYLFDGDRDTLYRIHGTTEPQTIGTNVSSGCIRMFNQDIINLYERVPVNTKVVVLRPD
AHVEPLEAFATAREEEGPGHLSVVPKP

Sequences:

>Translated_267_residues
MTGDDCEAMMPDLCNGLRSARARALRGASVLSLTLLAAGCMATDRDVGAIASVAPVHPSFLAMYAAKPAERFPLPATDIS
AVDPRYFRQEVAYPRSEPPGTVVVDPGNKFLYLVRENGRALRYGVGVGKAGLAWNGTAEIKRKAEWPRWTPTADMIRREP
ERNGPWRNGMAPGLTNPLGPRALYLFDGDRDTLYRIHGTTEPQTIGTNVSSGCIRMFNQDIINLYERVPVNTKVVVLRPD
AHVEPLEAFATAREEEGPGHLSVVPKP
>Mature_266_residues
TGDDCEAMMPDLCNGLRSARARALRGASVLSLTLLAAGCMATDRDVGAIASVAPVHPSFLAMYAAKPAERFPLPATDISA
VDPRYFRQEVAYPRSEPPGTVVVDPGNKFLYLVRENGRALRYGVGVGKAGLAWNGTAEIKRKAEWPRWTPTADMIRREPE
RNGPWRNGMAPGLTNPLGPRALYLFDGDRDTLYRIHGTTEPQTIGTNVSSGCIRMFNQDIINLYERVPVNTKVVVLRPDA
HVEPLEAFATAREEEGPGHLSVVPKP

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=148, Percent_Identity=33.7837837837838, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788299, Length=178, Percent_Identity=33.1460674157303, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787968, Length=116, Percent_Identity=39.6551724137931, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 29179; Mature: 29047

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGDDCEAMMPDLCNGLRSARARALRGASVLSLTLLAAGCMATDRDVGAIASVAPVHPSF
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHH
LAMYAAKPAERFPLPATDISAVDPRYFRQEVAYPRSEPPGTVVVDPGNKFLYLVRENGRA
HHHHHCCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEECCCCE
LRYGVGVGKAGLAWNGTAEIKRKAEWPRWTPTADMIRREPERNGPWRNGMAPGLTNPLGP
EEEECCCCCCCCEECCHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
RALYLFDGDRDTLYRIHGTTEPQTIGTNVSSGCIRMFNQDIINLYERVPVNTKVVVLRPD
CEEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
AHVEPLEAFATAREEEGPGHLSVVPKP
CCCCHHHHHHHHHCCCCCCEEEECCCC
>Mature Secondary Structure 
TGDDCEAMMPDLCNGLRSARARALRGASVLSLTLLAAGCMATDRDVGAIASVAPVHPSF
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHH
LAMYAAKPAERFPLPATDISAVDPRYFRQEVAYPRSEPPGTVVVDPGNKFLYLVRENGRA
HHHHHCCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEECCCCE
LRYGVGVGKAGLAWNGTAEIKRKAEWPRWTPTADMIRREPERNGPWRNGMAPGLTNPLGP
EEEECCCCCCCCEECCHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
RALYLFDGDRDTLYRIHGTTEPQTIGTNVSSGCIRMFNQDIINLYERVPVNTKVVVLRPD
CEEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
AHVEPLEAFATAREEEGPGHLSVVPKP
CCCCHHHHHHHHHCCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]