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The map label for this gene is ygiP [C]

Identifier: 170751077

GI number: 170751077

Start: 4994176

End: 4995042

Strand: Reverse

Name: ygiP [C]

Synonym: Mrad2831_4688

Alternate gene names: 170751077

Gene position: 4995042-4994176 (Counterclockwise)

Preceding gene: 170751084

Following gene: 170751076

Centisome position: 82.18

GC content: 70.36

Gene sequence:

>867_bases
ATGGACGTGGACGACCTGAGAACCTTCGTGGAAGTGGCCGATGCGGGTGGGGTATCCGCGGCGTCCCGTCGCCTCAACAT
GGCGAAATCGATCGTCAGCCGGCGGCTTCTCCGGCTGGAGGCCGAGGTCGGTACCCAACTCCTCGCCCGCACCACCCGGG
GCGCGGCACTGACCGAGGCAGGCACGACGTTCCGGGAGCACGCGGCCCGCGTCTGCGCCGAGGTGGACGCCGCCCTGGAG
GCCGTGTCACCCGGCGGCGCGCTCCGCGGTCTCCTGCGGGTCGCCGTGCCATCCACCTTCGGCCCGACGCACTTCGCGCC
GGCCATCGCAGAACTCACCCGCCGCCATCCGCAGTTACGGATCAACTGCCGCTACAGCGACCGCTACGTGGATCTCGTCA
CGGAAGGCTTCGATTGCGGCATCCGGGTCGGGTACCTGCCGGATTCGAACTTGGTCGCGCGCCGCATCGGGTCCTTCTCC
GTGCGGCTGTTCGCGAGCCCGGACTATGTCGCCACGCACGGCGCCCCCGAGACGCCCGAGGACGTGCCCCGCCATCCCGC
CGTGATGATCGCGACGGAAACCTGGACGTTCAGCGCCGGGGGCAAGCCGTTCCCGGTCCGCCCGACGGGCCGCTTCAAGG
CCGACAGCGCCATCGCCATCGCGGAGGCCACAGCCGCGGGTGCGGGTATCGCCGCGCTGCCCGATGTCATCGCGGAACCC
TACGTCGCGGCCGGGACCCTGATACCGGTCATGCCGCGCTACGCGCTTCCCTCGATCGGGATGTTCGTCGTGCGCCCACC
GGGGCAGCACTCCTCGCGCAAGGTTCAGGCGCTCACCGACCTGCTGATCGAGCGGTTCGGCCGATAA

Upstream 100 bases:

>100_bases
CCTTCTTCGATGTGCATCCTCGCCACGGAACGTAGCGTCGCCGTGGTGGGGACGGTATCCTCCGACATAGGCAAGCTCCG
TCCCGGGAAGCGGAACGCGC

Downstream 100 bases:

>100_bases
GGCCCCCTTGCAGCGACAGGTGCCGCCCTGGCAAGCGTACCGGCGGCGTTCCGGCATCAGGGACGCAGAGTGCCGGAAGT
GGCGGCTAGTGGCCCTTCTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MDVDDLRTFVEVADAGGVSAASRRLNMAKSIVSRRLLRLEAEVGTQLLARTTRGAALTEAGTTFREHAARVCAEVDAALE
AVSPGGALRGLLRVAVPSTFGPTHFAPAIAELTRRHPQLRINCRYSDRYVDLVTEGFDCGIRVGYLPDSNLVARRIGSFS
VRLFASPDYVATHGAPETPEDVPRHPAVMIATETWTFSAGGKPFPVRPTGRFKADSAIAIAEATAAGAGIAALPDVIAEP
YVAAGTLIPVMPRYALPSIGMFVVRPPGQHSSRKVQALTDLLIERFGR

Sequences:

>Translated_288_residues
MDVDDLRTFVEVADAGGVSAASRRLNMAKSIVSRRLLRLEAEVGTQLLARTTRGAALTEAGTTFREHAARVCAEVDAALE
AVSPGGALRGLLRVAVPSTFGPTHFAPAIAELTRRHPQLRINCRYSDRYVDLVTEGFDCGIRVGYLPDSNLVARRIGSFS
VRLFASPDYVATHGAPETPEDVPRHPAVMIATETWTFSAGGKPFPVRPTGRFKADSAIAIAEATAAGAGIAALPDVIAEP
YVAAGTLIPVMPRYALPSIGMFVVRPPGQHSSRKVQALTDLLIERFGR
>Mature_288_residues
MDVDDLRTFVEVADAGGVSAASRRLNMAKSIVSRRLLRLEAEVGTQLLARTTRGAALTEAGTTFREHAARVCAEVDAALE
AVSPGGALRGLLRVAVPSTFGPTHFAPAIAELTRRHPQLRINCRYSDRYVDLVTEGFDCGIRVGYLPDSNLVARRIGSFS
VRLFASPDYVATHGAPETPEDVPRHPAVMIATETWTFSAGGKPFPVRPTGRFKADSAIAIAEATAAGAGIAALPDVIAEP
YVAAGTLIPVMPRYALPSIGMFVVRPPGQHSSRKVQALTDLLIERFGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=28.4210526315789, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=29.7945205479452, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI87081978, Length=290, Percent_Identity=30.6896551724138, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1789639, Length=286, Percent_Identity=29.020979020979, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=29.5138888888889, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1787589, Length=289, Percent_Identity=27.681660899654, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787128, Length=287, Percent_Identity=26.1324041811847, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1787601, Length=122, Percent_Identity=31.1475409836066, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790262, Length=256, Percent_Identity=23.828125, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30771; Mature: 30771

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVDDLRTFVEVADAGGVSAASRRLNMAKSIVSRRLLRLEAEVGTQLLARTTRGAALTEA
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHC
GTTFREHAARVCAEVDAALEAVSPGGALRGLLRVAVPSTFGPTHFAPAIAELTRRHPQLR
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEE
INCRYSDRYVDLVTEGFDCGIRVGYLPDSNLVARRIGSFSVRLFASPDYVATHGAPETPE
EEEEECCEEEEEHHCCCCCCEEEECCCCCHHHHHHHCCEEEEEEECCCEEEECCCCCCHH
DVPRHPAVMIATETWTFSAGGKPFPVRPTGRFKADSAIAIAEATAAGAGIAALPDVIAEP
HCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEHHCCCCCHHHHHHHHHCC
YVAAGTLIPVMPRYALPSIGMFVVRPPGQHSSRKVQALTDLLIERFGR
HHHCCCHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDVDDLRTFVEVADAGGVSAASRRLNMAKSIVSRRLLRLEAEVGTQLLARTTRGAALTEA
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHC
GTTFREHAARVCAEVDAALEAVSPGGALRGLLRVAVPSTFGPTHFAPAIAELTRRHPQLR
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEE
INCRYSDRYVDLVTEGFDCGIRVGYLPDSNLVARRIGSFSVRLFASPDYVATHGAPETPE
EEEEECCEEEEEHHCCCCCCEEEECCCCCHHHHHHHCCEEEEEEECCCEEEECCCCCCHH
DVPRHPAVMIATETWTFSAGGKPFPVRPTGRFKADSAIAIAEATAAGAGIAALPDVIAEP
HCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEHHCCCCCHHHHHHHHHCC
YVAAGTLIPVMPRYALPSIGMFVVRPPGQHSSRKVQALTDLLIERFGR
HHHCCCHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]