| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
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The map label for this gene is dhmA1 [H]
Identifier: 170750961
GI number: 170750961
Start: 4867232
End: 4868281
Strand: Direct
Name: dhmA1 [H]
Synonym: Mrad2831_4572
Alternate gene names: 170750961
Gene position: 4867232-4868281 (Clockwise)
Preceding gene: 170750959
Following gene: 170750962
Centisome position: 80.08
GC content: 74.1
Gene sequence:
>1050_bases ATGGCCCGCGAGACCGATCCCGACACATCCGCCTGGAGCCGCCGCCGCCTCCTGAAGAGCGCGGTAGCCACCGCCGCCCT CGCCGAACTCGGCGTCGGCGGGACCGCGCGGGCGCAGGGTGCCCCGGCCCCCGGCGCCCCGGTCCCCGGCGTCATGCCGG GCGTCCTGAAGCAGGTCGAGGCCGGCGTGCTCGACGTCGGCTACGTCGAGGCCGGTCCCGCCGACGGGCCGGCGGTCATC CTGCTTCACGGCTGGCCCTACGACATCCACGCCTTCGCGGAGGTCGTGCCGATCCTCGCGGCGGCCGGGCACCGGGTGAT CGTGCCGTACCTGCGTGGCTACGGCACCACCCGCTTCCTGGCATCGGACACGGTCCGGAACGGCGAGCAGGCGGCACTCG CGGTGGACGTCATCGCCCTGATGGACGCCCTGAAGATCCCCCAGGCCATCCTGGGCGGCTTCGACTGGGGCGCGCGGACG GCCGACATCGTCGCGGCGCTGTGGCCGGAGCGGTGCCGGGCGCTGGTGGCGGTCAGCGGCTACCTGATCGGCAACCAGGA GGCCGGCAAGAAGCCGCTCCCGCCGCGGGCCGAGCTGTCCTGGTGGTACCAGTTCTACTTCGCCACCAGCCGGGGGCGGG CCGGCTACGAGGCCTACCGCGCCGACTTCGCCAGGCTGATCTGGCAGACCGCCTCGCCGCGCTGGCGCTTCGACGACGCC ACCTTCGCGCGGAGCGCCCCGGCCCTCGACAACCCGGATCACGTCAGCATCGTCATCCACAATTACCGCTGGCGGATGGG CCTCGCCGAAGGCGAGCGCCAGTACGACGCGCTGGAGCGCCGCCTCGCTGAGGCGCCCACGATCGGCGTGCCGGCCATCA CCCTGGAGGGCGACGCGAACGGCGCCCCGCATCCGGACCCCGCCAGCTACGCGGCCAAGTTTACCGGGCGCTACGCGCAC CGGCTGATCACCGGCGGGATCGGCCACAACCTGCCGCAGGAGGCCCCGCGCGCCTTCGCGCAGGCCGTGATCGACGCGGC CGCGGCCTGA
Upstream 100 bases:
>100_bases ATGGGCCTCTGAAGGTGTCCTCAAGGCCCTCTCAAAGCGCGGTGTCGAACATCGGGATAGGTTTCGCTCCATCGAAGACT TTCCGACGAGGGAGCCGTCC
Downstream 100 bases:
>100_bases CCGCGCCGGCGCGGCCGGGTCATCCCCGGAAACACGACCATCCCGAGACGATGACGGAGGTTGCCATGCGGTTCCTGGCT GTCGCGCTGCCGGCCCTGCT
Product: alpha/beta hydrolase fold protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 349; Mature: 348
Protein sequence:
>349_residues MARETDPDTSAWSRRRLLKSAVATAALAELGVGGTARAQGAPAPGAPVPGVMPGVLKQVEAGVLDVGYVEAGPADGPAVI LLHGWPYDIHAFAEVVPILAAAGHRVIVPYLRGYGTTRFLASDTVRNGEQAALAVDVIALMDALKIPQAILGGFDWGART ADIVAALWPERCRALVAVSGYLIGNQEAGKKPLPPRAELSWWYQFYFATSRGRAGYEAYRADFARLIWQTASPRWRFDDA TFARSAPALDNPDHVSIVIHNYRWRMGLAEGERQYDALERRLAEAPTIGVPAITLEGDANGAPHPDPASYAAKFTGRYAH RLITGGIGHNLPQEAPRAFAQAVIDAAAA
Sequences:
>Translated_349_residues MARETDPDTSAWSRRRLLKSAVATAALAELGVGGTARAQGAPAPGAPVPGVMPGVLKQVEAGVLDVGYVEAGPADGPAVI LLHGWPYDIHAFAEVVPILAAAGHRVIVPYLRGYGTTRFLASDTVRNGEQAALAVDVIALMDALKIPQAILGGFDWGART ADIVAALWPERCRALVAVSGYLIGNQEAGKKPLPPRAELSWWYQFYFATSRGRAGYEAYRADFARLIWQTASPRWRFDDA TFARSAPALDNPDHVSIVIHNYRWRMGLAEGERQYDALERRLAEAPTIGVPAITLEGDANGAPHPDPASYAAKFTGRYAH RLITGGIGHNLPQEAPRAFAQAVIDAAAA >Mature_348_residues ARETDPDTSAWSRRRLLKSAVATAALAELGVGGTARAQGAPAPGAPVPGVMPGVLKQVEAGVLDVGYVEAGPADGPAVIL LHGWPYDIHAFAEVVPILAAAGHRVIVPYLRGYGTTRFLASDTVRNGEQAALAVDVIALMDALKIPQAILGGFDWGARTA DIVAALWPERCRALVAVSGYLIGNQEAGKKPLPPRAELSWWYQFYFATSRGRAGYEAYRADFARLIWQTASPRWRFDDAT FARSAPALDNPDHVSIVIHNYRWRMGLAEGERQYDALERRLAEAPTIGVPAITLEGDANGAPHPDPASYAAKFTGRYAHR LITGGIGHNLPQEAPRAFAQAVIDAAAA
Specific function: Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds, leading to the formation of the corresponding primary alcohols, halide ions and protons [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the haloalkane dehalogenase family. Type 1 subfamily [H]
Homologues:
Organism=Homo sapiens, GI27597073, Length=167, Percent_Identity=29.940119760479, Blast_Score=69, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR000639 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: =3.8.1.5 [H]
Molecular weight: Translated: 37347; Mature: 37215
Theoretical pI: Translated: 7.29; Mature: 7.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARETDPDTSAWSRRRLLKSAVATAALAELGVGGTARAQGAPAPGAPVPGVMPGVLKQVE CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH AGVLDVGYVEAGPADGPAVILLHGWPYDIHAFAEVVPILAAAGHRVIVPYLRGYGTTRFL CCCEEECCEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEHHHHCCCCCEEE ASDTVRNGEQAALAVDVIALMDALKIPQAILGGFDWGARTADIVAALWPERCRALVAVSG HHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHC YLIGNQEAGKKPLPPRAELSWWYQFYFATSRGRAGYEAYRADFARLIWQTASPRWRFDDA EEEECCCCCCCCCCCCCHHEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC TFARSAPALDNPDHVSIVIHNYRWRMGLAEGERQYDALERRLAEAPTIGVPAITLEGDAN HHHCCCCCCCCCCEEEEEEECCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC GAPHPDPASYAAKFTGRYAHRLITGGIGHNLPQEAPRAFAQAVIDAAAA CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure ARETDPDTSAWSRRRLLKSAVATAALAELGVGGTARAQGAPAPGAPVPGVMPGVLKQVE CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH AGVLDVGYVEAGPADGPAVILLHGWPYDIHAFAEVVPILAAAGHRVIVPYLRGYGTTRFL CCCEEECCEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEHHHHCCCCCEEE ASDTVRNGEQAALAVDVIALMDALKIPQAILGGFDWGARTADIVAALWPERCRALVAVSG HHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHC YLIGNQEAGKKPLPPRAELSWWYQFYFATSRGRAGYEAYRADFARLIWQTASPRWRFDDA EEEECCCCCCCCCCCCCHHEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC TFARSAPALDNPDHVSIVIHNYRWRMGLAEGERQYDALERRLAEAPTIGVPAITLEGDAN HHHCCCCCCCCCCEEEEEEECCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC GAPHPDPASYAAKFTGRYAHRLITGGIGHNLPQEAPRAFAQAVIDAAAA CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]