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The map label for this gene is cph2 [H]

Identifier: 170750930

GI number: 170750930

Start: 4822001

End: 4823281

Strand: Direct

Name: cph2 [H]

Synonym: Mrad2831_4541

Alternate gene names: 170750930

Gene position: 4822001-4823281 (Clockwise)

Preceding gene: 170750929

Following gene: 170750931

Centisome position: 79.34

GC content: 75.49

Gene sequence:

>1281_bases
ATGCAGGACCTCTCCGATCCCGTCACCCTCCCGGCCGGCGCCGTCCTGTTCGACGAGGGGTCGATCGGGCACTGCGCCTA
CCTGATCCTGAGCGGCCGCATCGCGATCTTCCGGCGGCGCGACGGCGGAGAGACCGTGCTCGCCCGGCGCGGGGCCGGCG
AGATCTTCGGCGAGATGGCGATCCTCGACGCCCTCCCGCGCTCCGCGGGCGCGCGTGCCGAGGCGGATTGCGTGCTCGTC
CCCGTGAGCGCGGCGCAGATTCAACAGCGGCTCGCCGGCGCCGACCCGATCCTGCGCCTCTGCCTCGAGGGGCTCATCGC
CCGGTTCCGCGAGACCCTGCCGCGCCTCGGGCCGGCCGTGGCGGAGGGGCCTCCGGCGCCGCTGTCGCCCTCCGCCCGCG
CCGATTTCGACGCGACGGTCGCGTCCCTCGCGCAGGAGCGCGCCCTGCGGCGGGCCCTGGCCCGGGACGAGTTCGCGCTG
TTCCTGCAGCCGATCGTGCGGCTCGCCACCGGGCGGCTCGCCGGCTTCGAGGCCCTGATCCGCTGGCACGATCCCGAGCG
CGGGCTCGTGGCGCCCGCGTCCTTCATCCCGGCCGCCGAGGCGAACGGCCTGATCCTCGCGATCACCGCCTGGGTGATCG
ACGCGATCGGCCGGATCGTGCCCCGGATCCTGCAGGCCGGCCTCCAAGCCCCCGCCGCCGTCGAGCCGTCCCTGTTCGTG
AGCTTCAACGTCACGGCCCAGGACCTCGCCCGGTCGGACATCCCCACCCTGATCGACGCGATGCTGCGCCGGACCGGCAT
CGCGCCCGACGCCCTCAAGCTCGAGATCACCGAGAGCGCGCTCATGCAGGATCCGGCCGGGGCAGCGGCCGCCCTCGCGC
GCTGCCGCGCCGCCGGCCTCGGCATCGCGGTGGACGATTTCGGCACCGGCTACTCCTCGCTCAGCCATCTCAGCACCCTG
CCGATCACCACGCTGAAGGTGGACCGGGCCTTCGTCCGGGCGATGCTGGCGGAGCCGCGCGATCGCCGGATCGTCCAGAC
CATCCTGCGGCTCGCCGAGGAGATCGGCGTGGTGGCGGTCGCGGAGGGCATCGAGGGCCGCGCCGAGGCGGAGGCCCTCG
CCGCCCTGGGCTGCGCCCTGGGCCAGGGCTACCATTTCGGCCGCCCGATGCCGGTGGCCGACGCCCTCGCGGCGGCGGCG
GCCTGGAACGCCGAGGCGTGGCGCGTCGGGCTGCCCCGAGGGACCGGCCAGGGCCGGCCGAGGGTCCGCGCCCAGGGCTG
A

Upstream 100 bases:

>100_bases
TCCCGCGCGGCTGATCCGGCCACCCCTTGATCCGATCTTAAGGTCGCTGTGCCAACGATCGCGCCGGGCCTTCCCCGCGG
AGGCGCAGCGTCTCCGACCG

Downstream 100 bases:

>100_bases
GGGATTTGGGGGGCCCGGCGCGGTCTTTCGCCGCCTCCGCGAGCGTGCTTTCGATGCACCGGGCGGGCGGGAAGCGCGCG
GTTCCGGGCGGAAACGCTTG

Product: cyclic nucleotide-binding protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MQDLSDPVTLPAGAVLFDEGSIGHCAYLILSGRIAIFRRRDGGETVLARRGAGEIFGEMAILDALPRSAGARAEADCVLV
PVSAAQIQQRLAGADPILRLCLEGLIARFRETLPRLGPAVAEGPPAPLSPSARADFDATVASLAQERALRRALARDEFAL
FLQPIVRLATGRLAGFEALIRWHDPERGLVAPASFIPAAEANGLILAITAWVIDAIGRIVPRILQAGLQAPAAVEPSLFV
SFNVTAQDLARSDIPTLIDAMLRRTGIAPDALKLEITESALMQDPAGAAAALARCRAAGLGIAVDDFGTGYSSLSHLSTL
PITTLKVDRAFVRAMLAEPRDRRIVQTILRLAEEIGVVAVAEGIEGRAEAEALAALGCALGQGYHFGRPMPVADALAAAA
AWNAEAWRVGLPRGTGQGRPRVRAQG

Sequences:

>Translated_426_residues
MQDLSDPVTLPAGAVLFDEGSIGHCAYLILSGRIAIFRRRDGGETVLARRGAGEIFGEMAILDALPRSAGARAEADCVLV
PVSAAQIQQRLAGADPILRLCLEGLIARFRETLPRLGPAVAEGPPAPLSPSARADFDATVASLAQERALRRALARDEFAL
FLQPIVRLATGRLAGFEALIRWHDPERGLVAPASFIPAAEANGLILAITAWVIDAIGRIVPRILQAGLQAPAAVEPSLFV
SFNVTAQDLARSDIPTLIDAMLRRTGIAPDALKLEITESALMQDPAGAAAALARCRAAGLGIAVDDFGTGYSSLSHLSTL
PITTLKVDRAFVRAMLAEPRDRRIVQTILRLAEEIGVVAVAEGIEGRAEAEALAALGCALGQGYHFGRPMPVADALAAAA
AWNAEAWRVGLPRGTGQGRPRVRAQG
>Mature_426_residues
MQDLSDPVTLPAGAVLFDEGSIGHCAYLILSGRIAIFRRRDGGETVLARRGAGEIFGEMAILDALPRSAGARAEADCVLV
PVSAAQIQQRLAGADPILRLCLEGLIARFRETLPRLGPAVAEGPPAPLSPSARADFDATVASLAQERALRRALARDEFAL
FLQPIVRLATGRLAGFEALIRWHDPERGLVAPASFIPAAEANGLILAITAWVIDAIGRIVPRILQAGLQAPAAVEPSLFV
SFNVTAQDLARSDIPTLIDAMLRRTGIAPDALKLEITESALMQDPAGAAAALARCRAAGLGIAVDDFGTGYSSLSHLSTL
PITTLKVDRAFVRAMLAEPRDRRIVQTILRLAEEIGVVAVAEGIEGRAEAEALAALGCALGQGYHFGRPMPVADALAAAA
AWNAEAWRVGLPRGTGQGRPRVRAQG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=261, Percent_Identity=34.8659003831418, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI1790496, Length=249, Percent_Identity=33.3333333333333, Blast_Score=154, Evalue=9e-39,
Organism=Escherichia coli, GI1787541, Length=243, Percent_Identity=34.5679012345679, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI226510982, Length=261, Percent_Identity=32.5670498084291, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI87081743, Length=251, Percent_Identity=33.4661354581673, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI87081845, Length=253, Percent_Identity=34.7826086956522, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1786507, Length=293, Percent_Identity=27.3037542662116, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1788502, Length=251, Percent_Identity=29.8804780876494, Blast_Score=121, Evalue=9e-29,
Organism=Escherichia coli, GI87081980, Length=261, Percent_Identity=31.8007662835249, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1788849, Length=255, Percent_Identity=30.5882352941176, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787055, Length=248, Percent_Identity=29.8387096774194, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI87082096, Length=248, Percent_Identity=28.6290322580645, Blast_Score=95, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 44811; Mature: 44811

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS00889 CNMP_BINDING_2 ; PS50042 CNMP_BINDING_3 ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDLSDPVTLPAGAVLFDEGSIGHCAYLILSGRIAIFRRRDGGETVLARRGAGEIFGEMA
CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCEEEEEECCCCCEEEEECCCHHHHHHHH
ILDALPRSAGARAEADCVLVPVSAAQIQQRLAGADPILRLCLEGLIARFRETLPRLGPAV
HHHHCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
AEGPPAPLSPSARADFDATVASLAQERALRRALARDEFALFLQPIVRLATGRLAGFEALI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
RWHDPERGLVAPASFIPAAEANGLILAITAWVIDAIGRIVPRILQAGLQAPAAVEPSLFV
HCCCCCCCCCCCHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
SFNVTAQDLARSDIPTLIDAMLRRTGIAPDALKLEITESALMQDPAGAAAALARCRAAGL
EECCCHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHCC
GIAVDDFGTGYSSLSHLSTLPITTLKVDRAFVRAMLAEPRDRRIVQTILRLAEEIGVVAV
CEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEE
AEGIEGRAEAEALAALGCALGQGYHFGRPMPVADALAAAAAWNAEAWRVGLPRGTGQGRP
ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCC
RVRAQG
CCCCCC
>Mature Secondary Structure
MQDLSDPVTLPAGAVLFDEGSIGHCAYLILSGRIAIFRRRDGGETVLARRGAGEIFGEMA
CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCEEEEEECCCCCEEEEECCCHHHHHHHH
ILDALPRSAGARAEADCVLVPVSAAQIQQRLAGADPILRLCLEGLIARFRETLPRLGPAV
HHHHCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
AEGPPAPLSPSARADFDATVASLAQERALRRALARDEFALFLQPIVRLATGRLAGFEALI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
RWHDPERGLVAPASFIPAAEANGLILAITAWVIDAIGRIVPRILQAGLQAPAAVEPSLFV
HCCCCCCCCCCCHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
SFNVTAQDLARSDIPTLIDAMLRRTGIAPDALKLEITESALMQDPAGAAAALARCRAAGL
EECCCHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHCC
GIAVDDFGTGYSSLSHLSTLPITTLKVDRAFVRAMLAEPRDRRIVQTILRLAEEIGVVAV
CEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEE
AEGIEGRAEAEALAALGCALGQGYHFGRPMPVADALAAAAAWNAEAWRVGLPRGTGQGRP
ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCC
RVRAQG
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]