| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
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The map label for this gene is 170750767
Identifier: 170750767
GI number: 170750767
Start: 4642957
End: 4644378
Strand: Reverse
Name: 170750767
Synonym: Mrad2831_4378
Alternate gene names: NA
Gene position: 4644378-4642957 (Counterclockwise)
Preceding gene: 170750768
Following gene: 170750766
Centisome position: 76.42
GC content: 72.08
Gene sequence:
>1422_bases ATGACGCGAGACGCCGCCATCGCGCGCGCCACGGAGGCCTTCGATTCGGGCGCGTTCCTCGCGCTCCTGCGGGAGGCTGT GGCGATGCCCACCGAGAGCCAGGCCCCCGGCCAGGAAGCGGCGCTCCGCGCCTATCTCGACGCCTTCATCGCGCCCCTCG TCGCCCGCCTCGGCTTCGAGACCCCGGAAATCTTCCCGAACCCGGACGGGGTGCACGGCCCGTTCCTGATCGCCGAGCGG CACGAGGGTATGGGCCTGCCCACCGTGCTGATCTACGGCCACGGCGACACGGTGCGGGGCTATCCCGAGCAGTGGCGCGA GGGCCTCGGCCCCTGGGAGATCGTGGTCGAGGGCGACCGCTGGTACGGCCGCGGCACCGCCGACAACAAGGGCCAGCACG TCCTCAACCTCGCCGCCCTGGAGCAGGTGATCGCGGCCCGCGAGGGCCATCTCGGCTTCAACGTGAAGCTGCTGATCGAG ATGGGCGAGGAATCGGGCTCCCCGGGCCTGCGGCCGTTCTGCCGGGAGCAGGCCGAGTCCCTGCGCTCCGACGTGCTGAT CGCCTCGGACGGCCCCCGCCTCAACGGCGAGCGCCCGACCCTCTTCCTGGGCTCCCGCGGCGCCTACAATTTCGAGCTGA GCCTGAACCTGCGCGAGGGCCCGCACCATTCCGGCAACTGGGGCGGCCTGCTGCGCAACCCCGGCACGGTGCTGGCCTCG GCGATCGCCTCGATGGTCGACGCGCGGGGCAGCATCCTGGTGGACGCCCTGCGGCCGCCGCCGATCCCCGAGGGCGTGCG CGCGGCTTTGGCCGACATCCGCGTCGGCGAGGACCCGACCGCGCCCACGATCGATTCCGACTGGGGCGAGCCGGGCCTCA CCCCGGCCGAGCGGGTCTTCGCCTGGAACACGCTGGAGGTGCTGGCCTTCAAGACCGGCGATCCGGACGGCCCGCTCAAC GCCGTGCCGCCCCACGCCAAGGCAACCCTGCAGCTGCGCTTCGTGGTCGGCACCGACTGGCAGAACCTGATCCGGAACGT GCGCGCCCATCTCGACGCGCACGGCTTCCCGATGATCGAGGTCAGGCCGGCCCGCGCCGCCGAGGTGTTCCAGGCGACGC GGCTGCCGGTGGAGGATCCCTGGGTCGAGTGGGCGCTCCAGTCGATCGAGGCGAGTTCCGGCAAGAAGCCGGCGCTGCTG CCCAATCTCGGCGGCTCGCTGCCGAACGACGCCTTCTCGGAGATCTTAGGGTTGCCGACCCTCTGGGTGCCGCATTCCTA CCCGGCCTGCCGCCAGCACGGGCCCGACGAGCACATGCTCGCCTCCGGCACCCGCGAGGGTCTGGCGATCATGGCCGGGC TGTTCTGGGATCTCGGGCAGGATGGCCCGGACATCCTCCGCCGCCGCGAAGCGAGGGCCTGA
Upstream 100 bases:
>100_bases CGGCCTGCGCGACATCACGGCGCCCGAGGCGCGCAATTGACGCCTCCGCCGGGCCAGAGCCGGCCGGCAGATTAACGAAA TGTTTCACGGGAAACACACC
Downstream 100 bases:
>100_bases CACGATGAGCGAGCCGGTCGTCCGCATCCGCGATCTGACGATCGCGCTCCCCAAGGGCGCCGACCGCCCGCACGCGGTCG AGGGCCTGAACCTCGACCTC
Product: hypothetical protein
Products: NA
Alternate protein names: Peptidase; M20/M25/M40 Family Peptidase; Peptidase Family; ArgE/DapE/Acy1 Family Protein; Succinyl-Diaminopimelate Desuccinylase; Beta-Ala-His Dipeptidase; Peptidase Dimerisation Domain-Containing Protein; Deacylase; Peptidase Dimerization Domain Protein; Peptidase Dimerisation Domain Protein; N-Acyl-L-Amino Acid Amidohydrolase; Desuccinylase Deacetylase Or Peptidase; Acetylornithine Deacetylase ArgE; M20 Family Peptidase; N-Succinyl-Diaminopimelate Deacylase; Succinyl-Diaminopimelate Desuccinylase Protein; ArgE/DapE/Acy1 Family Peptidase; Nonspecific Dipeptidase
Number of amino acids: Translated: 473; Mature: 472
Protein sequence:
>473_residues MTRDAAIARATEAFDSGAFLALLREAVAMPTESQAPGQEAALRAYLDAFIAPLVARLGFETPEIFPNPDGVHGPFLIAER HEGMGLPTVLIYGHGDTVRGYPEQWREGLGPWEIVVEGDRWYGRGTADNKGQHVLNLAALEQVIAAREGHLGFNVKLLIE MGEESGSPGLRPFCREQAESLRSDVLIASDGPRLNGERPTLFLGSRGAYNFELSLNLREGPHHSGNWGGLLRNPGTVLAS AIASMVDARGSILVDALRPPPIPEGVRAALADIRVGEDPTAPTIDSDWGEPGLTPAERVFAWNTLEVLAFKTGDPDGPLN AVPPHAKATLQLRFVVGTDWQNLIRNVRAHLDAHGFPMIEVRPARAAEVFQATRLPVEDPWVEWALQSIEASSGKKPALL PNLGGSLPNDAFSEILGLPTLWVPHSYPACRQHGPDEHMLASGTREGLAIMAGLFWDLGQDGPDILRRREARA
Sequences:
>Translated_473_residues MTRDAAIARATEAFDSGAFLALLREAVAMPTESQAPGQEAALRAYLDAFIAPLVARLGFETPEIFPNPDGVHGPFLIAER HEGMGLPTVLIYGHGDTVRGYPEQWREGLGPWEIVVEGDRWYGRGTADNKGQHVLNLAALEQVIAAREGHLGFNVKLLIE MGEESGSPGLRPFCREQAESLRSDVLIASDGPRLNGERPTLFLGSRGAYNFELSLNLREGPHHSGNWGGLLRNPGTVLAS AIASMVDARGSILVDALRPPPIPEGVRAALADIRVGEDPTAPTIDSDWGEPGLTPAERVFAWNTLEVLAFKTGDPDGPLN AVPPHAKATLQLRFVVGTDWQNLIRNVRAHLDAHGFPMIEVRPARAAEVFQATRLPVEDPWVEWALQSIEASSGKKPALL PNLGGSLPNDAFSEILGLPTLWVPHSYPACRQHGPDEHMLASGTREGLAIMAGLFWDLGQDGPDILRRREARA >Mature_472_residues TRDAAIARATEAFDSGAFLALLREAVAMPTESQAPGQEAALRAYLDAFIAPLVARLGFETPEIFPNPDGVHGPFLIAERH EGMGLPTVLIYGHGDTVRGYPEQWREGLGPWEIVVEGDRWYGRGTADNKGQHVLNLAALEQVIAAREGHLGFNVKLLIEM GEESGSPGLRPFCREQAESLRSDVLIASDGPRLNGERPTLFLGSRGAYNFELSLNLREGPHHSGNWGGLLRNPGTVLASA IASMVDARGSILVDALRPPPIPEGVRAALADIRVGEDPTAPTIDSDWGEPGLTPAERVFAWNTLEVLAFKTGDPDGPLNA VPPHAKATLQLRFVVGTDWQNLIRNVRAHLDAHGFPMIEVRPARAAEVFQATRLPVEDPWVEWALQSIEASSGKKPALLP NLGGSLPNDAFSEILGLPTLWVPHSYPACRQHGPDEHMLASGTREGLAIMAGLFWDLGQDGPDILRRREARA
Specific function: Unknown
COG id: COG0624
COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI21071039, Length=477, Percent_Identity=24.1090146750524, Blast_Score=90, Evalue=5e-18, Organism=Homo sapiens, GI271398239, Length=186, Percent_Identity=32.258064516129, Blast_Score=74, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193211059, Length=267, Percent_Identity=27.3408239700375, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6319758, Length=363, Percent_Identity=22.3140495867769, Blast_Score=89, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6321159, Length=477, Percent_Identity=23.0607966457023, Blast_Score=75, Evalue=2e-14, Organism=Drosophila melanogaster, GI24585880, Length=170, Percent_Identity=32.3529411764706, Blast_Score=73, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51214; Mature: 51082
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: PS00758 ARGE_DAPE_CPG2_1 ; PS00759 ARGE_DAPE_CPG2_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRDAAIARATEAFDSGAFLALLREAVAMPTESQAPGQEAALRAYLDAFIAPLVARLGFE CCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC TPEIFPNPDGVHGPFLIAERHEGMGLPTVLIYGHGDTVRGYPEQWREGLGPWEIVVEGDR CCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCC WYGRGTADNKGQHVLNLAALEQVIAAREGHLGFNVKLLIEMGEESGSPGLRPFCREQAES EECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHH LRSDVLIASDGPRLNGERPTLFLGSRGAYNFELSLNLREGPHHSGNWGGLLRNPGTVLAS HHHCEEEECCCCCCCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHH AIASMVDARGSILVDALRPPPIPEGVRAALADIRVGEDPTAPTIDSDWGEPGLTPAERVF HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHE AWNTLEVLAFKTGDPDGPLNAVPPHAKATLQLRFVVGTDWQNLIRNVRAHLDAHGFPMIE ECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCCCEEE VRPARAAEVFQATRLPVEDPWVEWALQSIEASSGKKPALLPNLGGSLPNDAFSEILGLPT ECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCE LWVPHSYPACRQHGPDEHMLASGTREGLAIMAGLFWDLGQDGPDILRRREARA EECCCCCCHHHHCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCC >Mature Secondary Structure TRDAAIARATEAFDSGAFLALLREAVAMPTESQAPGQEAALRAYLDAFIAPLVARLGFE CCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC TPEIFPNPDGVHGPFLIAERHEGMGLPTVLIYGHGDTVRGYPEQWREGLGPWEIVVEGDR CCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCC WYGRGTADNKGQHVLNLAALEQVIAAREGHLGFNVKLLIEMGEESGSPGLRPFCREQAES EECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHH LRSDVLIASDGPRLNGERPTLFLGSRGAYNFELSLNLREGPHHSGNWGGLLRNPGTVLAS HHHCEEEECCCCCCCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHH AIASMVDARGSILVDALRPPPIPEGVRAALADIRVGEDPTAPTIDSDWGEPGLTPAERVF HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHE AWNTLEVLAFKTGDPDGPLNAVPPHAKATLQLRFVVGTDWQNLIRNVRAHLDAHGFPMIE ECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCCCEEE VRPARAAEVFQATRLPVEDPWVEWALQSIEASSGKKPALLPNLGGSLPNDAFSEILGLPT ECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCE LWVPHSYPACRQHGPDEHMLASGTREGLAIMAGLFWDLGQDGPDILRRREARA EECCCCCCHHHHCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA