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The map label for this gene is yncD [C]

Identifier: 170750655

GI number: 170750655

Start: 4511620

End: 4514226

Strand: Reverse

Name: yncD [C]

Synonym: Mrad2831_4265

Alternate gene names: 170750655

Gene position: 4514226-4511620 (Counterclockwise)

Preceding gene: 170750656

Following gene: 170750654

Centisome position: 74.27

GC content: 68.78

Gene sequence:

>2607_bases
ATGCGTGCCCTACGAGGCAGCTTGATCGCGTCCGTGGCGCTGTTGCCGGGTGTCGCGCAGGCTCAACAAGCCGTCACCCT
CGGCGAGATCAGCGTCGTCTCGACGTCGCCGGTGGGTGCGGGCGGCGGCAATTCCAGCGGCGCCCAGAATCTCGATACGC
TCGCCCAGGCCGCCCCGACCTTGCCGGCCCCGGCCGGCGGGGTGCGGCTGCGGGGCTCCGAGCAGCCGCTCAACAAGATC
CCCAGCACCGTCGAGACCGTCACGGCGCGGCAGATCGAGGTCGATCAGGGCTCCGACAACGTGATCGCCACGCTGGCGCG
GCGCACGCCCGGGGTGAACCTCAACGACTCGCAGGGCAACGCGAACCGGGTCGATCTCAGCTACCGCGGCTTCACGGCCT
CGTCGGTGCAGGGCGTGCCGCAGGGGCTCGCCGTCTACCAGAACGGCGTGCGCATCAACGAGGCCTTCGGCGACGTCGTC
AATTTCGACCTGATCCCGCCGCAGGCGATCCAGCGCATCGACGTGGTCACCGGCAACCCGGTCTTCGGCCTCAACGCCAT
CGGCGGCGCGGTCAACATCCAGATGAAGAACGGTTTCACCTGGCAGGGCACCGAGATCTCGGCCTGGGGCGGCTCGGACG
CGCGCACCGCCGGCTACCTGGAGTACGGCAAGATCTCCGGTCCCTGGAGCTTCTACTTCACCGGCGACGGCCTGAACGAC
CGCGGCTGGCGCTACCAGAACCCGAGCACGATCGGCCGCCTCTACGCGGATCTCGGCTACCGCTCGCAGGATTCGGAATT
CCACCTGATCGGGCTCGCCGCCCGCAGCTTCTACGGCGCCGCCGCCGCCACGCCGGTGGACTTCACCCATCTCGACCCGC
GGGCGATCTTCACCTACCCGCAGACCCAGACCACGCAGGTCGGCACGCTCCAGCTCACCGGCCGGGTCGACCTCTCTCCG
ACCTGGGACCTCGCCGGCAACGCCTATTACCGGCGCTTCAGCGAGTTCTACGTCGACGGCAACCAGGGCAACTTCGAGAA
CTGCAGCAGCCGCAGCAGCTTCCGGGGCTCGCTCTGCTACCAGGACGACGCGTTCAACGTGAACGCGCCGCCCACCAGCC
AGGTGGCGGCCCGCCGCGCCTACGCCAACCAGTTCGCGATCCTCGGCCTGAACAACCGGACGATCCCGTTCCTGCGGAAC
ATCCCGTACGGCACGATCGACACGACCCTCACCGAGGCCGAATCCTACGGCGGCTCGCTCCAGGCCGCCAACCGCGACCG
GATCTTCGGCCTGAACAACGCCTTCGTGGTCGGCGGCAGCGTCGACGCCTCCACCTTCGCGTTCAAATCGTCCAGCCAGC
TGGGCGTCATCAACCCGAACCTGTCGATCACCGTCGACCCGAACAACCCGTACTACGGCACGATCCCGGGCCTCGGCACG
CCGGACATCCGCACCCTCGGGGCGATCGGCCTCGCGCCGAGCAACGTCAGCGGCTCGACCCTGTATCTCGGCCTCTACGC
CACCGACACACTGGACGTGACCGACCGGCTGTCGCTGACCGGCGGCTTCCGGCTCAACTACGCGCGCATCCAGACCCGGG
ACCAGACCGGCTTCGCGCCGGACGTGACCGGCGCCCACGAGTACACCAAGGTCAACCCGCTCGCGGGCCTGACCTACCAG
TTCGACCCGGCGCTCAACCTCTACGGCGGCTACTCGGAGTCGAACCGCGCCCCGACCCCGCTGGAACTGTCCTGCTCCAG
CCCGACCCAGCCGTGCCTGCTGCCGAACTCGCTGGTGGCGGACCCGCCGCTCAAGCAGGTCACCGGCCGGACCTACGAGG
CCGGCTTCCGCGGCGTGATCCCGGCCTTCCTGTCGGGCGGCGCCCTCACCTACAAGGCCGGCGTCTACCGCACCGACCTG
AGCAACGACCTCTACCAGGTCGCCGTCGCCGGCAACGCCGCCCGCGCCTACTACATCAACGTGCCCGCGACCCGGCGCCA
GGGCATCGAGGTCGGCGCCGAGTACGCGGTCACGCCCGACCTGCTGGTCTACGCCAACTACGCCCTGGTCGACGCGACCT
TCCAGTTCAACGCGACCCTCTCGTCGCCCAACAACCCGCTGGCGAGCACCGGCGCGGCCGGCGGCGCCGCGGGCGGCGAC
GTGATCCCGAACGGCGGCATCCGCGTCCGGCCGGGCGACAAGATCCCGCTGATCCCCGATCGCCAGATCAAGGCGGGCTT
CGAGTACAGCATCACCCCGAACTGGCGCTTCGGCCTCAACGTCTCGGCCTTCTCGTCGTCCTACTACCGGGGCGACGAGT
CGAACCTCAACCGCAAGCTGCCGGCCTACTACGTGATGAACCTGACGACGAAGTATCAGGTCAGCAAGAACCTGGAGATC
TTCGGGCTGATCACCAACCTGACCAACAACCGCTACGCCACGTTCGGCACCTTCGCGGAGACGGGCGCGGTCGCCGGCAA
CCTGTCGATCAACGACCCGCGGACCACGACCCTGGCGCAGCCGCTCTCGATCTACGCCGGCCTGACCTACCGGTTCGGGG
CGGATCCGGTCCCGATGGCGCCGGAGCCGATCATCCGGAAGTACTGA

Upstream 100 bases:

>100_bases
AACAGAATGTGAATTGAGATCTGGACCCGACCCGAGATCAGTGAGCCTCTCGCAGCCGACGAGAAGCGGCGCGTGCCTTA
AATCCAGGTTGGGGGAAGAT

Downstream 100 bases:

>100_bases
GCCCGTCCGAGGGGGGAACGACGGAGCGAGGGGCTGCGGGATCCGCGGCCCCTCTTCCGTTTGAGGCATCGCGTCTTCGC
GCCCGGACGATGAGCCCGGA

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor YncD; NB-Dependent Siderophore Receptor; Nb-Dependent Receptor; OM Receptor nB; NB Domain-Containing Protein; Outer Membrane Ferric Siderophore Receptor; NB-Dependent Receptor-Like Protein; NB-Dependent Receptor Plug; Ferrienterobactin-Like Protein; Outer Membrane Iron(III) Dicitrate Receptor; Iron Complex Outer Membrane Receptor Protein; Outer Membrane Receptor Protein Mostly Fe Transport; NB-Dependent Receptor Domain Protein

Number of amino acids: Translated: 868; Mature: 868

Protein sequence:

>868_residues
MRALRGSLIASVALLPGVAQAQQAVTLGEISVVSTSPVGAGGGNSSGAQNLDTLAQAAPTLPAPAGGVRLRGSEQPLNKI
PSTVETVTARQIEVDQGSDNVIATLARRTPGVNLNDSQGNANRVDLSYRGFTASSVQGVPQGLAVYQNGVRINEAFGDVV
NFDLIPPQAIQRIDVVTGNPVFGLNAIGGAVNIQMKNGFTWQGTEISAWGGSDARTAGYLEYGKISGPWSFYFTGDGLND
RGWRYQNPSTIGRLYADLGYRSQDSEFHLIGLAARSFYGAAAATPVDFTHLDPRAIFTYPQTQTTQVGTLQLTGRVDLSP
TWDLAGNAYYRRFSEFYVDGNQGNFENCSSRSSFRGSLCYQDDAFNVNAPPTSQVAARRAYANQFAILGLNNRTIPFLRN
IPYGTIDTTLTEAESYGGSLQAANRDRIFGLNNAFVVGGSVDASTFAFKSSSQLGVINPNLSITVDPNNPYYGTIPGLGT
PDIRTLGAIGLAPSNVSGSTLYLGLYATDTLDVTDRLSLTGGFRLNYARIQTRDQTGFAPDVTGAHEYTKVNPLAGLTYQ
FDPALNLYGGYSESNRAPTPLELSCSSPTQPCLLPNSLVADPPLKQVTGRTYEAGFRGVIPAFLSGGALTYKAGVYRTDL
SNDLYQVAVAGNAARAYYINVPATRRQGIEVGAEYAVTPDLLVYANYALVDATFQFNATLSSPNNPLASTGAAGGAAGGD
VIPNGGIRVRPGDKIPLIPDRQIKAGFEYSITPNWRFGLNVSAFSSSYYRGDESNLNRKLPAYYVMNLTTKYQVSKNLEI
FGLITNLTNNRYATFGTFAETGAVAGNLSINDPRTTTLAQPLSIYAGLTYRFGADPVPMAPEPIIRKY

Sequences:

>Translated_868_residues
MRALRGSLIASVALLPGVAQAQQAVTLGEISVVSTSPVGAGGGNSSGAQNLDTLAQAAPTLPAPAGGVRLRGSEQPLNKI
PSTVETVTARQIEVDQGSDNVIATLARRTPGVNLNDSQGNANRVDLSYRGFTASSVQGVPQGLAVYQNGVRINEAFGDVV
NFDLIPPQAIQRIDVVTGNPVFGLNAIGGAVNIQMKNGFTWQGTEISAWGGSDARTAGYLEYGKISGPWSFYFTGDGLND
RGWRYQNPSTIGRLYADLGYRSQDSEFHLIGLAARSFYGAAAATPVDFTHLDPRAIFTYPQTQTTQVGTLQLTGRVDLSP
TWDLAGNAYYRRFSEFYVDGNQGNFENCSSRSSFRGSLCYQDDAFNVNAPPTSQVAARRAYANQFAILGLNNRTIPFLRN
IPYGTIDTTLTEAESYGGSLQAANRDRIFGLNNAFVVGGSVDASTFAFKSSSQLGVINPNLSITVDPNNPYYGTIPGLGT
PDIRTLGAIGLAPSNVSGSTLYLGLYATDTLDVTDRLSLTGGFRLNYARIQTRDQTGFAPDVTGAHEYTKVNPLAGLTYQ
FDPALNLYGGYSESNRAPTPLELSCSSPTQPCLLPNSLVADPPLKQVTGRTYEAGFRGVIPAFLSGGALTYKAGVYRTDL
SNDLYQVAVAGNAARAYYINVPATRRQGIEVGAEYAVTPDLLVYANYALVDATFQFNATLSSPNNPLASTGAAGGAAGGD
VIPNGGIRVRPGDKIPLIPDRQIKAGFEYSITPNWRFGLNVSAFSSSYYRGDESNLNRKLPAYYVMNLTTKYQVSKNLEI
FGLITNLTNNRYATFGTFAETGAVAGNLSINDPRTTTLAQPLSIYAGLTYRFGADPVPMAPEPIIRKY
>Mature_868_residues
MRALRGSLIASVALLPGVAQAQQAVTLGEISVVSTSPVGAGGGNSSGAQNLDTLAQAAPTLPAPAGGVRLRGSEQPLNKI
PSTVETVTARQIEVDQGSDNVIATLARRTPGVNLNDSQGNANRVDLSYRGFTASSVQGVPQGLAVYQNGVRINEAFGDVV
NFDLIPPQAIQRIDVVTGNPVFGLNAIGGAVNIQMKNGFTWQGTEISAWGGSDARTAGYLEYGKISGPWSFYFTGDGLND
RGWRYQNPSTIGRLYADLGYRSQDSEFHLIGLAARSFYGAAAATPVDFTHLDPRAIFTYPQTQTTQVGTLQLTGRVDLSP
TWDLAGNAYYRRFSEFYVDGNQGNFENCSSRSSFRGSLCYQDDAFNVNAPPTSQVAARRAYANQFAILGLNNRTIPFLRN
IPYGTIDTTLTEAESYGGSLQAANRDRIFGLNNAFVVGGSVDASTFAFKSSSQLGVINPNLSITVDPNNPYYGTIPGLGT
PDIRTLGAIGLAPSNVSGSTLYLGLYATDTLDVTDRLSLTGGFRLNYARIQTRDQTGFAPDVTGAHEYTKVNPLAGLTYQ
FDPALNLYGGYSESNRAPTPLELSCSSPTQPCLLPNSLVADPPLKQVTGRTYEAGFRGVIPAFLSGGALTYKAGVYRTDL
SNDLYQVAVAGNAARAYYINVPATRRQGIEVGAEYAVTPDLLVYANYALVDATFQFNATLSSPNNPLASTGAAGGAAGGD
VIPNGGIRVRPGDKIPLIPDRQIKAGFEYSITPNWRFGLNVSAFSSSYYRGDESNLNRKLPAYYVMNLTTKYQVSKNLEI
FGLITNLTNNRYATFGTFAETGAVAGNLSINDPRTTTLAQPLSIYAGLTYRFGADPVPMAPEPIIRKY

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 92684; Mature: 92684

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALRGSLIASVALLPGVAQAQQAVTLGEISVVSTSPVGAGGGNSSGAQNLDTLAQAAPT
CCCHHHHHHHHHHHCCCHHHHHHEEEECEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCC
LPAPAGGVRLRGSEQPLNKIPSTVETVTARQIEVDQGSDNVIATLARRTPGVNLNDSQGN
CCCCCCCEEEECCCCCHHHCCCHHHHHEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCC
ANRVDLSYRGFTASSVQGVPQGLAVYQNGVRINEAFGDVVNFDLIPPQAIQRIDVVTGNP
CEEEEEEECCCCHHHCCCCCCCHHHHCCCCEEECCCCCEEEECCCCHHHHHEEEEEECCC
VFGLNAIGGAVNIQMKNGFTWQGTEISAWGGSDARTAGYLEYGKISGPWSFYFTGDGLND
EEEEECCCCEEEEEECCCEEECCCEEEECCCCCCCCCCEEEECCCCCCEEEEEECCCCCC
RGWRYQNPSTIGRLYADLGYRSQDSEFHLIGLAARSFYGAAAATPVDFTHLDPRAIFTYP
CCCEECCCHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCCCCCCCCEEEECCCCEEEECC
QTQTTQVGTLQLTGRVDLSPTWDLAGNAYYRRFSEFYVDGNQGNFENCSSRSSFRGSLCY
CCCCEEEEEEEEEEEEECCCCCCCCCCHHHHEEEEEEEECCCCCCCCCCCCCCCCCCEEE
QDDAFNVNAPPTSQVAARRAYANQFAILGLNNRTIPFLRNIPYGTIDTTLTEAESYGGSL
CCCCEECCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHCCCCCCCCHHHHHHHHCCCCE
QAANRDRIFGLNNAFVVGGSVDASTFAFKSSSQLGVINPNLSITVDPNNPYYGTIPGLGT
EECCCCEEEECCCCEEEECCCCCCEEEEECCCCEEEECCCEEEEECCCCCEEECCCCCCC
PDIRTLGAIGLAPSNVSGSTLYLGLYATDTLDVTDRLSLTGGFRLNYARIQTRDQTGFAP
CCHHHHEEEECCCCCCCCCEEEEEEEEECCCCCCCEEEECCCEEEEEEEEEECCCCCCCC
DVTGAHEYTKVNPLAGLTYQFDPALNLYGGYSESNRAPTPLELSCSSPTQPCLLPNSLVA
CCCCCCCCEEECCCCCCEEEECCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
DPPLKQVTGRTYEAGFRGVIPAFLSGGALTYKAGVYRTDLSNDLYQVAVAGNAARAYYIN
CCCHHHHCCCEECCCCCHHHHHHHCCCEEEEECCEEEECCCCCEEEEEEECCCEEEEEEE
VPATRRQGIEVGAEYAVTPDLLVYANYALVDATFQFNATLSSPNNPLASTGAAGGAAGGD
CCCCCCCCCCCCCCEECCCCEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCC
VIPNGGIRVRPGDKIPLIPDRQIKAGFEYSITPNWRFGLNVSAFSSSYYRGDESNLNRKL
CCCCCCEEECCCCCCCCCCCCHHCCCEEEEECCCEEEEEEEHHCCCCCCCCCCCCCCCCC
PAYYVMNLTTKYQVSKNLEIFGLITNLTNNRYATFGTFAETGAVAGNLSINDPRTTTLAQ
CEEEEEEEEEEEEECCCCEEEEEEEECCCCCEEEECCHHHCCCEEEEEECCCCCCHHHHC
PLSIYAGLTYRFGADPVPMAPEPIIRKY
CHHHHCCCEEEECCCCCCCCCCHHHHCC
>Mature Secondary Structure
MRALRGSLIASVALLPGVAQAQQAVTLGEISVVSTSPVGAGGGNSSGAQNLDTLAQAAPT
CCCHHHHHHHHHHHCCCHHHHHHEEEECEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCC
LPAPAGGVRLRGSEQPLNKIPSTVETVTARQIEVDQGSDNVIATLARRTPGVNLNDSQGN
CCCCCCCEEEECCCCCHHHCCCHHHHHEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCC
ANRVDLSYRGFTASSVQGVPQGLAVYQNGVRINEAFGDVVNFDLIPPQAIQRIDVVTGNP
CEEEEEEECCCCHHHCCCCCCCHHHHCCCCEEECCCCCEEEECCCCHHHHHEEEEEECCC
VFGLNAIGGAVNIQMKNGFTWQGTEISAWGGSDARTAGYLEYGKISGPWSFYFTGDGLND
EEEEECCCCEEEEEECCCEEECCCEEEECCCCCCCCCCEEEECCCCCCEEEEEECCCCCC
RGWRYQNPSTIGRLYADLGYRSQDSEFHLIGLAARSFYGAAAATPVDFTHLDPRAIFTYP
CCCEECCCHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCCCCCCCCEEEECCCCEEEECC
QTQTTQVGTLQLTGRVDLSPTWDLAGNAYYRRFSEFYVDGNQGNFENCSSRSSFRGSLCY
CCCCEEEEEEEEEEEEECCCCCCCCCCHHHHEEEEEEEECCCCCCCCCCCCCCCCCCEEE
QDDAFNVNAPPTSQVAARRAYANQFAILGLNNRTIPFLRNIPYGTIDTTLTEAESYGGSL
CCCCEECCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHCCCCCCCCHHHHHHHHCCCCE
QAANRDRIFGLNNAFVVGGSVDASTFAFKSSSQLGVINPNLSITVDPNNPYYGTIPGLGT
EECCCCEEEECCCCEEEECCCCCCEEEEECCCCEEEECCCEEEEECCCCCEEECCCCCCC
PDIRTLGAIGLAPSNVSGSTLYLGLYATDTLDVTDRLSLTGGFRLNYARIQTRDQTGFAP
CCHHHHEEEECCCCCCCCCEEEEEEEEECCCCCCCEEEECCCEEEEEEEEEECCCCCCCC
DVTGAHEYTKVNPLAGLTYQFDPALNLYGGYSESNRAPTPLELSCSSPTQPCLLPNSLVA
CCCCCCCCEEECCCCCCEEEECCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
DPPLKQVTGRTYEAGFRGVIPAFLSGGALTYKAGVYRTDLSNDLYQVAVAGNAARAYYIN
CCCHHHHCCCEECCCCCHHHHHHHCCCEEEEECCEEEECCCCCEEEEEEECCCEEEEEEE
VPATRRQGIEVGAEYAVTPDLLVYANYALVDATFQFNATLSSPNNPLASTGAAGGAAGGD
CCCCCCCCCCCCCCEECCCCEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCC
VIPNGGIRVRPGDKIPLIPDRQIKAGFEYSITPNWRFGLNVSAFSSSYYRGDESNLNRKL
CCCCCCEEECCCCCCCCCCCCHHCCCEEEEECCCEEEEEEEHHCCCCCCCCCCCCCCCCC
PAYYVMNLTTKYQVSKNLEIFGLITNLTNNRYATFGTFAETGAVAGNLSINDPRTTTLAQ
CEEEEEEEEEEEEECCCCEEEEEEEECCCCCEEEECCHHHCCCEEEEEECCCCCCHHHHC
PLSIYAGLTYRFGADPVPMAPEPIIRKY
CHHHHCCCEEEECCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA