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The map label for this gene is ybhD [H]

Identifier: 170750521

GI number: 170750521

Start: 4383721

End: 4384668

Strand: Reverse

Name: ybhD [H]

Synonym: Mrad2831_4128

Alternate gene names: 170750521

Gene position: 4384668-4383721 (Counterclockwise)

Preceding gene: 170750527

Following gene: 170750520

Centisome position: 72.14

GC content: 69.2

Gene sequence:

>948_bases
ATGAAACTCCCCGTCGACGGTGTTCAGGCCTTCGTTCTCATCGCGGAGCTCGGCAGCTACCGCCGGGCGTCCGAGAGTCT
CGGCTTGACCCAGACCGCGCTCACCCGGCGGATCCAGAAGCTCGAGGGCTTCCTCGGCGCGATGCTCCTCGACCGCACCA
CGCGGACGGTGCGCCTCAGCGCCGTCGGCCGCGAGTTCCTGCCGCTGGCCACGCGGCTCATCGCCGACTTCACCCAGGGG
ATCGAGCGCTTGCGCACGACCTCTCGGCTGGGCGTCGGCGACGTCACCGTCGCGACCGTCCAATCGATTGCCTTCCGTCG
GATGCCGGCGGTTCTGCAGGCCTACGCGCGCGATCATCCGCAGAACCGGGTGCAGATCCTCGAACGCTCCGGCGCGCTGG
TCACCGAAGCCGTGCGCAAGGGTGAGGCGGATTTCGGGATCCACATCCAGCAGGAGGCCGATGCCGATCTCCTCGAGGAT
CGGCTCGTGCGGGATCCGTTCGTGCTGATCTGCCACCGCAGCCATCCGCTGGCCGGACGGCGCGAGCTTCGGTGGACCGA
GTTATCCGGTACGGATCTCGTGACGCTCGGCGGCGCCAGCGGCAACCGGGCGCGCGTCGAGGCTCAACTGGCAGCCGCGG
ACTTGCCGCCGCGCGGTCGGTTCGTGGTCGAGAGCACGCCGACCGCCCTGGCGCTGGTGTCGGCCGGCATCGGCGCCGCG
ATTCTCCCGGCGGCCCTCGGGGGCGCTTCTCCGCGCGACGATCTCGTTGAGGTCTTGCTGACCGAGCCCGCGATCTACCG
CACGATCAGTCTGGTGCGCCGCCGCAATACCTCCCTGACGCCGGCCGCAGCCATGTTCTACGAGGCACTCAAGGCTGAAC
TGTCGACGGATCTCGATGAGTTTGCACTGCGAGGAGATCCGGGCGGCGCCGCCCTCCTGCGCCGATGA

Upstream 100 bases:

>100_bases
CGGAGTCGCATCGTGTCGGGCAGGCGTCGCCCCGCGCCTTGTCCCGCAGCGGCATGGTCGAGTAAAATGAATTGATCGCA
TCAATTCATGACGTTCCGGC

Downstream 100 bases:

>100_bases
GGGCGTGCCGCCGGAAAATCTCGCTCTCGGGATCCGCCGTCAACGCCCTGCATGACCGGGAAGGGGCGCAACGCGGGACG
GGCGGTTGGCGGAACAGGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MKLPVDGVQAFVLIAELGSYRRASESLGLTQTALTRRIQKLEGFLGAMLLDRTTRTVRLSAVGREFLPLATRLIADFTQG
IERLRTTSRLGVGDVTVATVQSIAFRRMPAVLQAYARDHPQNRVQILERSGALVTEAVRKGEADFGIHIQQEADADLLED
RLVRDPFVLICHRSHPLAGRRELRWTELSGTDLVTLGGASGNRARVEAQLAAADLPPRGRFVVESTPTALALVSAGIGAA
ILPAALGGASPRDDLVEVLLTEPAIYRTISLVRRRNTSLTPAAAMFYEALKAELSTDLDEFALRGDPGGAALLRR

Sequences:

>Translated_315_residues
MKLPVDGVQAFVLIAELGSYRRASESLGLTQTALTRRIQKLEGFLGAMLLDRTTRTVRLSAVGREFLPLATRLIADFTQG
IERLRTTSRLGVGDVTVATVQSIAFRRMPAVLQAYARDHPQNRVQILERSGALVTEAVRKGEADFGIHIQQEADADLLED
RLVRDPFVLICHRSHPLAGRRELRWTELSGTDLVTLGGASGNRARVEAQLAAADLPPRGRFVVESTPTALALVSAGIGAA
ILPAALGGASPRDDLVEVLLTEPAIYRTISLVRRRNTSLTPAAAMFYEALKAELSTDLDEFALRGDPGGAALLRR
>Mature_315_residues
MKLPVDGVQAFVLIAELGSYRRASESLGLTQTALTRRIQKLEGFLGAMLLDRTTRTVRLSAVGREFLPLATRLIADFTQG
IERLRTTSRLGVGDVTVATVQSIAFRRMPAVLQAYARDHPQNRVQILERSGALVTEAVRKGEADFGIHIQQEADADLLED
RLVRDPFVLICHRSHPLAGRRELRWTELSGTDLVTLGGASGNRARVEAQLAAADLPPRGRFVVESTPTALALVSAGIGAA
ILPAALGGASPRDDLVEVLLTEPAIYRTISLVRRRNTSLTPAAAMFYEALKAELSTDLDEFALRGDPGGAALLRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=297, Percent_Identity=36.026936026936, Blast_Score=191, Evalue=4e-50,
Organism=Escherichia coli, GI1788748, Length=296, Percent_Identity=33.445945945946, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI157672245, Length=299, Percent_Identity=28.4280936454849, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787601, Length=296, Percent_Identity=26.6891891891892, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1790399, Length=294, Percent_Identity=24.4897959183673, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788887, Length=242, Percent_Identity=27.6859504132231, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787879, Length=290, Percent_Identity=26.2068965517241, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI87081904, Length=174, Percent_Identity=25.8620689655172, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787530, Length=283, Percent_Identity=22.9681978798587, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34136; Mature: 34136

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLPVDGVQAFVLIAELGSYRRASESLGLTQTALTRRIQKLEGFLGAMLLDRTTRTVRLS
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHH
AVGREFLPLATRLIADFTQGIERLRTTSRLGVGDVTVATVQSIAFRRMPAVLQAYARDHP
HHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
QNRVQILERSGALVTEAVRKGEADFGIHIQQEADADLLEDRLVRDPFVLICHRSHPLAGR
HHHHHHHHHCCHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHCCCEEEEEECCCCCCCC
RELRWTELSGTDLVTLGGASGNRARVEAQLAAADLPPRGRFVVESTPTALALVSAGIGAA
CCCEEEECCCCCEEEECCCCCCCCEEEEEHHHCCCCCCCCEEEECCCHHHHHHHHCCCHH
ILPAALGGASPRDDLVEVLLTEPAIYRTISLVRRRNTSLTPAAAMFYEALKAELSTDLDE
HHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHH
FALRGDPGGAALLRR
HHCCCCCCCHHHCCC
>Mature Secondary Structure
MKLPVDGVQAFVLIAELGSYRRASESLGLTQTALTRRIQKLEGFLGAMLLDRTTRTVRLS
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHH
AVGREFLPLATRLIADFTQGIERLRTTSRLGVGDVTVATVQSIAFRRMPAVLQAYARDHP
HHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
QNRVQILERSGALVTEAVRKGEADFGIHIQQEADADLLEDRLVRDPFVLICHRSHPLAGR
HHHHHHHHHCCHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHCCCEEEEEECCCCCCCC
RELRWTELSGTDLVTLGGASGNRARVEAQLAAADLPPRGRFVVESTPTALALVSAGIGAA
CCCEEEECCCCCEEEECCCCCCCCEEEEEHHHCCCCCCCCEEEECCCHHHHHHHHCCCHH
ILPAALGGASPRDDLVEVLLTEPAIYRTISLVRRRNTSLTPAAAMFYEALKAELSTDLDE
HHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHH
FALRGDPGGAALLRR
HHCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]