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The map label for this gene is yggS [C]

Identifier: 170750500

GI number: 170750500

Start: 4359203

End: 4359955

Strand: Reverse

Name: yggS [C]

Synonym: Mrad2831_4107

Alternate gene names: 170750500

Gene position: 4359955-4359203 (Counterclockwise)

Preceding gene: 170750502

Following gene: 170750498

Centisome position: 71.74

GC content: 72.78

Gene sequence:

>753_bases
ATGGACGACGCGATCACCGACCCGAACCCGCCCGCGACGGACGGGATGGGCCAGCGGACCGACAAGCTCCCCGTCGGCCA
GGCCGACGTCGCCGCCGGTCTCGCCGAGGTGCGGGCGGCGATCGCCCGCGCCGCCGAGGATTCGGAGCGCGATCCCGCCG
AGATCCAGCTCGTCGCGGTCTCCAAGACCGTGCCGGCCGAGGGGATCCTGCCCGCGCTCAAGGCCGGCCATCGGGTCTTC
GGCGAGAACTACGTCCAGGAATCCGTGGCGAAGTGGCCGGGTCTCCGAGCCCGGTTCCCGGACGTGGAGCTGCACCTCGT
CGGGCCGCTGCAATCCAACAAGGCCCGGGAGGCGGTGGCCCTGTTCGACGTGATCCACTCCCTCGACCGGCTGTCGCTCG
CGGCGGCGCTGGCCAAGGAGATCGAGCGGTCCGGCCGGACCCCGAAGCTGCTGATCCAGGTCAACACCGGCGCGGAGCCG
CAGAAGGGCGGCGTGCTCCCGGACCAGCTCGCCACCCTCCTGTCGGAGTGCCGGGAGACCCACGGGCTGGCGATCCAGGG
CCTGATGTGCATCCCCCCGGCCGAGGACCCGCCCTCGGCCCACTTCGCCCTGCTGGCCCGGCTGGCGAAGGCGCACAACC
TGCCGATCCTCTCCATGGGCATGAGCGCCGACTTCCCGGCGGCGATCCAGCTCGGCGCCACCCATGTCCGGGTCGGGACC
GCGATCTTCGGGGCCCGGACCCGGAAGGCCTGA

Upstream 100 bases:

>100_bases
GGTCTGAGCTGGACAGCTGGGTCGCCGGGAAGGTGCCGCCGAGGTGTTGTGTACCGTGGGGCGCCTGGTTCGGCGTCCGG
CAGCGATAGGACGGCCCGCT

Downstream 100 bases:

>100_bases
GCCGGACGCGCGCCTCAGCCGATCCGCAGGTGCGTCCGCGGCCCGAGGCGGCGGAGCAGGCGCAGCAGGTCGGCCCGGGC
CAGGGCGACGCAGCCCTCGG

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MDDAITDPNPPATDGMGQRTDKLPVGQADVAAGLAEVRAAIARAAEDSERDPAEIQLVAVSKTVPAEGILPALKAGHRVF
GENYVQESVAKWPGLRARFPDVELHLVGPLQSNKAREAVALFDVIHSLDRLSLAAALAKEIERSGRTPKLLIQVNTGAEP
QKGGVLPDQLATLLSECRETHGLAIQGLMCIPPAEDPPSAHFALLARLAKAHNLPILSMGMSADFPAAIQLGATHVRVGT
AIFGARTRKA

Sequences:

>Translated_250_residues
MDDAITDPNPPATDGMGQRTDKLPVGQADVAAGLAEVRAAIARAAEDSERDPAEIQLVAVSKTVPAEGILPALKAGHRVF
GENYVQESVAKWPGLRARFPDVELHLVGPLQSNKAREAVALFDVIHSLDRLSLAAALAKEIERSGRTPKLLIQVNTGAEP
QKGGVLPDQLATLLSECRETHGLAIQGLMCIPPAEDPPSAHFALLARLAKAHNLPILSMGMSADFPAAIQLGATHVRVGT
AIFGARTRKA
>Mature_250_residues
MDDAITDPNPPATDGMGQRTDKLPVGQADVAAGLAEVRAAIARAAEDSERDPAEIQLVAVSKTVPAEGILPALKAGHRVF
GENYVQESVAKWPGLRARFPDVELHLVGPLQSNKAREAVALFDVIHSLDRLSLAAALAKEIERSGRTPKLLIQVNTGAEP
QKGGVLPDQLATLLSECRETHGLAIQGLMCIPPAEDPPSAHFALLARLAKAHNLPILSMGMSADFPAAIQLGATHVRVGT
AIFGARTRKA

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=239, Percent_Identity=34.7280334728033, Blast_Score=113, Evalue=2e-25,
Organism=Escherichia coli, GI1789321, Length=229, Percent_Identity=42.7947598253275, Blast_Score=148, Evalue=3e-37,
Organism=Caenorhabditis elegans, GI17533025, Length=215, Percent_Identity=33.4883720930233, Blast_Score=96, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6319435, Length=218, Percent_Identity=33.0275229357798, Blast_Score=92, Evalue=6e-20,
Organism=Drosophila melanogaster, GI45550861, Length=251, Percent_Identity=35.0597609561753, Blast_Score=122, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26379; Mature: 26379

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDAITDPNPPATDGMGQRTDKLPVGQADVAAGLAEVRAAIARAAEDSERDPAEIQLVAV
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
SKTVPAEGILPALKAGHRVFGENYVQESVAKWPGLRARFPDVELHLVGPLQSNKAREAVA
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHH
LFDVIHSLDRLSLAAALAKEIERSGRTPKLLIQVNTGAEPQKGGVLPDQLATLLSECRET
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
HGLAIQGLMCIPPAEDPPSAHFALLARLAKAHNLPILSMGMSADFPAAIQLGATHVRVGT
CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCHHEEHHH
AIFGARTRKA
HHHCCCCCCC
>Mature Secondary Structure
MDDAITDPNPPATDGMGQRTDKLPVGQADVAAGLAEVRAAIARAAEDSERDPAEIQLVAV
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
SKTVPAEGILPALKAGHRVFGENYVQESVAKWPGLRARFPDVELHLVGPLQSNKAREAVA
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHH
LFDVIHSLDRLSLAAALAKEIERSGRTPKLLIQVNTGAEPQKGGVLPDQLATLLSECRET
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
HGLAIQGLMCIPPAEDPPSAHFALLARLAKAHNLPILSMGMSADFPAAIQLGATHVRVGT
CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCHHEEHHH
AIFGARTRKA
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]