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The map label for this gene is yncD [C]

Identifier: 170750456

GI number: 170750456

Start: 4310015

End: 4312153

Strand: Reverse

Name: yncD [C]

Synonym: Mrad2831_4063

Alternate gene names: 170750456

Gene position: 4312153-4310015 (Counterclockwise)

Preceding gene: 170750457

Following gene: 170750455

Centisome position: 70.95

GC content: 71.58

Gene sequence:

>2139_bases
GTGACGCGGCTGCTCGCCGCGGGCGGTCTCGCCGTCGCGACCGGCGGGCGCGGCTGGGCGGCGCCGGATACCGGTGCCCC
GGCAGCCTCCGCCGTGACCCTGTCCGAGATCTCGGTGGTCTCGGCTGCGCCCCCGGTCGTCCCCGCGGCCGGCACGCCCG
GCGCCAGCGCCGGCTACGTCGGCGGCGTCACCGGGATCGGCGGCGCCCTGCTGACCGTCGACGCGGCCAGCGCCGGCCTC
ATCGGCGGCGCGGCCCTCAACGCCCGCCCGGTGACGCGCCCCGGCGAGGTGCTGGAGGCGGTGCCGGGCCTGATCGTCAC
CCAGCACAGCGGGGAGGGGAAGGCCAACCAGTACTTCCTGCGCGGCTTCAACCTCGACCACGGGACCGACATCGCCATCA
GCGTCGACGGCATGCCGGTCAACATGCGCACCCACGCCCACGGCCAGGGCTACGCCGACCTCAACTTCCTCATCCCCGAA
CTCGTCGGCGCGGTGGAGTATCACAAGGGACCGTACTTCGTGCGCGACGGCGACTTCGCCTCCGCGGGCTCGGTGCGCAT
CGACTATCTCGACACCGTTCAGAAGAACCTCGCGCTGACCACGATCGGCAGCTTCGGCTACAAGCGGGGCCTGTCGATCG
CCTCGGTGCCGGTGGGCGAGGGCAACCTGCTCGTGGCCGGCGAGGCGCAGGTCTACGACGGGCCGTGGGCCGTCCCGGAC
GCGCTGCGCAAGCTCAACGGCGTCGCCCGCTACAGCCAGGGCACGGCGCTGGACGGGTTCGCGGTCACCGGCATGGCCTA
CGCGTCCCGCTGGACGGCCACCAACCAGATCCCGGAGCGGGCCGTCGGCGCGGGGCTGATCGGCCGCTACGGCACCCTCA
ACCCCACGGATGGCGGCGACACCGGCCGGTTCTCGCTCTCGGGGCGGTTCAGCGCCACGGACGACACCGGGATCACGCGG
GCCTCGGCCTACGTGATCCGCTACCAGATGAACCTGTTCAACGACTTCACCTACTTCCTCAACGATCCCGTCGGCGGCGA
CCAGTTCCACCAGCTCGACCAGCGCGTCCTCGGCGGCGGCGAGGTGCTGCACATCTTCCAGGGCGACCTGTTCGGCCGGC
CGCTGGAAGTCGAGGTCGGCGCCCAGACCCGGACGGACTCGATCCGCGTCGGCCTGTTCAACACCGCCTTCCGCCGGTAC
CGGTCGACCGTGCTCGACGACCGCGTGCTGGAATCGAGCGGCGCCCTCTACCTGGACACGCGGGTGCGCTGGACCCCGTG
GCTGCGCACGAGCGTCGGCCTGCGGGCGGACGGCTACTACGCCGATGTCCGCTCCGACACGCCGGCGAATTCCGGCCGGG
CCACCGACGGCATCGTCAACCCGAAGCTCGGCCTCGTGCTCGGGCCCTGGTCCGACACCGAGATCTACGTGAATTACGGC
GGCGGCTTCCACTCGAACGACGCGCGCGGCGTCACCGCCACGGTCGATCCCGCGAGCCCCCTGTTCAACATCACCCGGTC
GCCCTTCCTGGTGCCCTCCACGGGCTACGAGCTGGGCCTGCGCAACCGCTCGATCGCCGGGCTGGAGACGAGCCTCGCCC
TGTTCCGGCTCGACTTCGCCTCGGAGAACATCTTCCAGGGCGACACCGGCACCACGGAGCCGAGCCGCCCGACCCGGCGC
TTCGGCGTCGAGTGGACGAACCGGTACGCGCTGACGCCGTGGCTCGCCCTGGACGGGGATCTGACGATCACCAACGCCCG
GTTCTCCCGCTACGACCCGGCGGGCAACCGGGTCCCGGAAGCCCCCACGACCATCGCGTCGGCGGGGGTGACCTTCGGTG
AGCCCCTCGGCTGGTTCGGGTCGCTCCGCTTCCGCTACTTCGGGCCGCGCCCGTTGATCGAGGACAACTCGATCCGCTCG
CGGTCGACCGCCCTCGTCAACGGCCGGATCGGCTACGCCTTCGGCAATGGCGTGAGCGTCTCGCTGGACGTGCTGAACCT
GACCAACAGCAGGTCCGACCAGATCACCTACGCGTACGCGTCCCGCCTGCCGGGTGAGCCCGCCGAGGGGCTGATCGACC
GCGTCTTCCATCCCGTCGAGCCCACGGCCGTGCGCCTGACGATCGCCGGACGGTTCTGA

Upstream 100 bases:

>100_bases
GCGCGGCGTGCGAGGGTCCGAGGATCGCCACGCCTCCTCCGATCCGCCGGTGTCCCGCCCGATCTCCCGCCACCCTCCTG
CCGCTCCCGGCCGCCGCGCC

Downstream 100 bases:

>100_bases
CCGCCGGCGCCGGCGCGATTCGCCGCGTCCCGCGCGTCGATCCGGCCGCCGCGCCGCACTCTCCGCGACGGAGGTGCCGG
TTCCGCACGGGCATCGCTTC

Product: TonB-dependent receptor plug

Products: NA

Alternate protein names: NB-Dependent Receptor Plug; Nb-Dependent Receptor; Outer Membrane Protein; NB-Dependent Receptor-Like Protein; NB-Dependent Outer Membrane Receptor; Outer Membrane Receptor; Outer Membrane Receptor Signal Peptide Protein; Iron Transport Outer Membrane Receptor; Outer Membrane Recepter Signal Peptide Protein; Outer Membrane Receptor For Iron Transport; NB Dependent/Ligand-Gated Channel; NB-Dependent Receptor Cobalamin Transporter; NB-Dependent Receptor Plug Domain Protein

Number of amino acids: Translated: 712; Mature: 711

Protein sequence:

>712_residues
MTRLLAAGGLAVATGGRGWAAPDTGAPAASAVTLSEISVVSAAPPVVPAAGTPGASAGYVGGVTGIGGALLTVDAASAGL
IGGAALNARPVTRPGEVLEAVPGLIVTQHSGEGKANQYFLRGFNLDHGTDIAISVDGMPVNMRTHAHGQGYADLNFLIPE
LVGAVEYHKGPYFVRDGDFASAGSVRIDYLDTVQKNLALTTIGSFGYKRGLSIASVPVGEGNLLVAGEAQVYDGPWAVPD
ALRKLNGVARYSQGTALDGFAVTGMAYASRWTATNQIPERAVGAGLIGRYGTLNPTDGGDTGRFSLSGRFSATDDTGITR
ASAYVIRYQMNLFNDFTYFLNDPVGGDQFHQLDQRVLGGGEVLHIFQGDLFGRPLEVEVGAQTRTDSIRVGLFNTAFRRY
RSTVLDDRVLESSGALYLDTRVRWTPWLRTSVGLRADGYYADVRSDTPANSGRATDGIVNPKLGLVLGPWSDTEIYVNYG
GGFHSNDARGVTATVDPASPLFNITRSPFLVPSTGYELGLRNRSIAGLETSLALFRLDFASENIFQGDTGTTEPSRPTRR
FGVEWTNRYALTPWLALDGDLTITNARFSRYDPAGNRVPEAPTTIASAGVTFGEPLGWFGSLRFRYFGPRPLIEDNSIRS
RSTALVNGRIGYAFGNGVSVSLDVLNLTNSRSDQITYAYASRLPGEPAEGLIDRVFHPVEPTAVRLTIAGRF

Sequences:

>Translated_712_residues
MTRLLAAGGLAVATGGRGWAAPDTGAPAASAVTLSEISVVSAAPPVVPAAGTPGASAGYVGGVTGIGGALLTVDAASAGL
IGGAALNARPVTRPGEVLEAVPGLIVTQHSGEGKANQYFLRGFNLDHGTDIAISVDGMPVNMRTHAHGQGYADLNFLIPE
LVGAVEYHKGPYFVRDGDFASAGSVRIDYLDTVQKNLALTTIGSFGYKRGLSIASVPVGEGNLLVAGEAQVYDGPWAVPD
ALRKLNGVARYSQGTALDGFAVTGMAYASRWTATNQIPERAVGAGLIGRYGTLNPTDGGDTGRFSLSGRFSATDDTGITR
ASAYVIRYQMNLFNDFTYFLNDPVGGDQFHQLDQRVLGGGEVLHIFQGDLFGRPLEVEVGAQTRTDSIRVGLFNTAFRRY
RSTVLDDRVLESSGALYLDTRVRWTPWLRTSVGLRADGYYADVRSDTPANSGRATDGIVNPKLGLVLGPWSDTEIYVNYG
GGFHSNDARGVTATVDPASPLFNITRSPFLVPSTGYELGLRNRSIAGLETSLALFRLDFASENIFQGDTGTTEPSRPTRR
FGVEWTNRYALTPWLALDGDLTITNARFSRYDPAGNRVPEAPTTIASAGVTFGEPLGWFGSLRFRYFGPRPLIEDNSIRS
RSTALVNGRIGYAFGNGVSVSLDVLNLTNSRSDQITYAYASRLPGEPAEGLIDRVFHPVEPTAVRLTIAGRF
>Mature_711_residues
TRLLAAGGLAVATGGRGWAAPDTGAPAASAVTLSEISVVSAAPPVVPAAGTPGASAGYVGGVTGIGGALLTVDAASAGLI
GGAALNARPVTRPGEVLEAVPGLIVTQHSGEGKANQYFLRGFNLDHGTDIAISVDGMPVNMRTHAHGQGYADLNFLIPEL
VGAVEYHKGPYFVRDGDFASAGSVRIDYLDTVQKNLALTTIGSFGYKRGLSIASVPVGEGNLLVAGEAQVYDGPWAVPDA
LRKLNGVARYSQGTALDGFAVTGMAYASRWTATNQIPERAVGAGLIGRYGTLNPTDGGDTGRFSLSGRFSATDDTGITRA
SAYVIRYQMNLFNDFTYFLNDPVGGDQFHQLDQRVLGGGEVLHIFQGDLFGRPLEVEVGAQTRTDSIRVGLFNTAFRRYR
STVLDDRVLESSGALYLDTRVRWTPWLRTSVGLRADGYYADVRSDTPANSGRATDGIVNPKLGLVLGPWSDTEIYVNYGG
GFHSNDARGVTATVDPASPLFNITRSPFLVPSTGYELGLRNRSIAGLETSLALFRLDFASENIFQGDTGTTEPSRPTRRF
GVEWTNRYALTPWLALDGDLTITNARFSRYDPAGNRVPEAPTTIASAGVTFGEPLGWFGSLRFRYFGPRPLIEDNSIRSR
STALVNGRIGYAFGNGVSVSLDVLNLTNSRSDQITYAYASRLPGEPAEGLIDRVFHPVEPTAVRLTIAGRF

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 75672; Mature: 75540

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLLAAGGLAVATGGRGWAAPDTGAPAASAVTLSEISVVSAAPPVVPAAGTPGASAGYV
CCCEEECCCEEEEECCCCCCCCCCCCCCCCEEEEHHEEEECCCCCCCCCCCCCCCCCCCC
GGVTGIGGALLTVDAASAGLIGGAALNARPVTRPGEVLEAVPGLIVTQHSGEGKANQYFL
CCCCCCCCEEEEEECCCCCEECCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCCEEEE
RGFNLDHGTDIAISVDGMPVNMRTHAHGQGYADLNFLIPELVGAVEYHKGPYFVRDGDFA
EEECCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
SAGSVRIDYLDTVQKNLALTTIGSFGYKRGLSIASVPVGEGNLLVAGEAQVYDGPWAVPD
CCCCEEEEEHHHHHHCEEEEEECCCHHHHCCEEEEEECCCCCEEEECCCEEECCCCCHHH
ALRKLNGVARYSQGTALDGFAVTGMAYASRWTATNQIPERAVGAGLIGRYGTLNPTDGGD
HHHHHHHHHCCCCCCCCCCEEEHHHHHHHHCCCCCCCCHHHHCCCHHCCCCCCCCCCCCC
TGRFSLSGRFSATDDTGITRASAYVIRYQMNLFNDFTYFLNDPVGGDQFHQLDQRVLGGG
CCEEEEECEECCCCCCCCEEEEEEEEEEEECHHCCEEEEECCCCCCHHHHHHHHHHCCCC
EVLHIFQGDLFGRPLEVEVGAQTRTDSIRVGLFNTAFRRYRSTVLDDRVLESSGALYLDT
CEEEEEECCCCCCCEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
RVRWTPWLRTSVGLRADGYYADVRSDTPANSGRATDGIVNPKLGLVLGPWSDTEIYVNYG
EEEECCCHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEC
GGFHSNDARGVTATVDPASPLFNITRSPFLVPSTGYELGLRNRSIAGLETSLALFRLDFA
CCCCCCCCCCEEEEECCCCCHHHCCCCCEEECCCCCEECCCCCCCCCHHHEEEEEEEECC
SENIFQGDTGTTEPSRPTRRFGVEWTNRYALTPWLALDGDLTITNARFSRYDPAGNRVPE
CCCEECCCCCCCCCCCCCHHCCCEECCCEEECEEEEECCCEEEEECCCCCCCCCCCCCCC
APTTIASAGVTFGEPLGWFGSLRFRYFGPRPLIEDNSIRSRSTALVNGRIGYAFGNGVSV
CCCHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECEEEEEECCCCEE
SLDVLNLTNSRSDQITYAYASRLPGEPAEGLIDRVFHPVEPTAVRLTIAGRF
EEEEEECCCCCCCEEEEEEHHCCCCCCHHHHHHHHCCCCCCCEEEEEEECCC
>Mature Secondary Structure 
TRLLAAGGLAVATGGRGWAAPDTGAPAASAVTLSEISVVSAAPPVVPAAGTPGASAGYV
CCEEECCCEEEEECCCCCCCCCCCCCCCCEEEEHHEEEECCCCCCCCCCCCCCCCCCCC
GGVTGIGGALLTVDAASAGLIGGAALNARPVTRPGEVLEAVPGLIVTQHSGEGKANQYFL
CCCCCCCCEEEEEECCCCCEECCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCCEEEE
RGFNLDHGTDIAISVDGMPVNMRTHAHGQGYADLNFLIPELVGAVEYHKGPYFVRDGDFA
EEECCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
SAGSVRIDYLDTVQKNLALTTIGSFGYKRGLSIASVPVGEGNLLVAGEAQVYDGPWAVPD
CCCCEEEEEHHHHHHCEEEEEECCCHHHHCCEEEEEECCCCCEEEECCCEEECCCCCHHH
ALRKLNGVARYSQGTALDGFAVTGMAYASRWTATNQIPERAVGAGLIGRYGTLNPTDGGD
HHHHHHHHHCCCCCCCCCCEEEHHHHHHHHCCCCCCCCHHHHCCCHHCCCCCCCCCCCCC
TGRFSLSGRFSATDDTGITRASAYVIRYQMNLFNDFTYFLNDPVGGDQFHQLDQRVLGGG
CCEEEEECEECCCCCCCCEEEEEEEEEEEECHHCCEEEEECCCCCCHHHHHHHHHHCCCC
EVLHIFQGDLFGRPLEVEVGAQTRTDSIRVGLFNTAFRRYRSTVLDDRVLESSGALYLDT
CEEEEEECCCCCCCEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
RVRWTPWLRTSVGLRADGYYADVRSDTPANSGRATDGIVNPKLGLVLGPWSDTEIYVNYG
EEEECCCHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEC
GGFHSNDARGVTATVDPASPLFNITRSPFLVPSTGYELGLRNRSIAGLETSLALFRLDFA
CCCCCCCCCCEEEEECCCCCHHHCCCCCEEECCCCCEECCCCCCCCCHHHEEEEEEEECC
SENIFQGDTGTTEPSRPTRRFGVEWTNRYALTPWLALDGDLTITNARFSRYDPAGNRVPE
CCCEECCCCCCCCCCCCCHHCCCEECCCEEECEEEEECCCEEEEECCCCCCCCCCCCCCC
APTTIASAGVTFGEPLGWFGSLRFRYFGPRPLIEDNSIRSRSTALVNGRIGYAFGNGVSV
CCCHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECEEEEEECCCCEE
SLDVLNLTNSRSDQITYAYASRLPGEPAEGLIDRVFHPVEPTAVRLTIAGRF
EEEEEECCCCCCCEEEEEEHHCCCCCCHHHHHHHHCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA