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The map label for this gene is ihfA

Identifier: 170750364

GI number: 170750364

Start: 4220360

End: 4220680

Strand: Reverse

Name: ihfA

Synonym: Mrad2831_3967

Alternate gene names: 170750364

Gene position: 4220680-4220360 (Counterclockwise)

Preceding gene: 170750365

Following gene: 170750363

Centisome position: 69.44

GC content: 66.36

Gene sequence:

>321_bases
ATGGCAGGCAAGACGGTGACGCGCGCCGACTTGAGCGAGGCCGTCTACCATCAGGTGGGCCTGTCGCGGACCGAGTCGGC
CGCCCTCGTCGAGACCGTGCTGTCCGAGATCTGCAGCTGCCTCGCGAGCGGCGAGACGGTGAAGCTGTCCTCGTTCGGCT
CCTTCGTGGTGCGCAGCAAGGGCAAGCGCGTCGGTCGGAATCCCAAGACCGGGGTCGAGGTCGCGATCGAGCCGCGGCAG
GTGATGGTGTTCAAGCCCTCCAACGTGCTCAAGGCCAAGATCAACGGCCTGAACGGCGCGGGTGAGCACGACGACGATTG
A

Upstream 100 bases:

>100_bases
TAGCGTGCCGGATCATAGGGATACGCCTTCAGCGTTCGGCGCGGCCAAGGGTGCCGCGCCGTGCGTCATGGGGCGAGGGA
TGCGGGCGAGGGGGCACGGC

Downstream 100 bases:

>100_bases
CCGCGCGGGCGTCACCGTCCGGGAGCGCGGCCGGATCGGCCGGACTCCAGGCTTGAGTGCGGCCCTGCGAGCCGGCAAGA
TCGCGCTGCTTCGCCCCGCT

Product: histone family protein DNA-binding protein

Products: NA

Alternate protein names: IHF-alpha

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MAGKTVTRADLSEAVYHQVGLSRTESAALVETVLSEICSCLASGETVKLSSFGSFVVRSKGKRVGRNPKTGVEVAIEPRQ
VMVFKPSNVLKAKINGLNGAGEHDDD

Sequences:

>Translated_106_residues
MAGKTVTRADLSEAVYHQVGLSRTESAALVETVLSEICSCLASGETVKLSSFGSFVVRSKGKRVGRNPKTGVEVAIEPRQ
VMVFKPSNVLKAKINGLNGAGEHDDD
>Mature_105_residues
AGKTVTRADLSEAVYHQVGLSRTESAALVETVLSEICSCLASGETVKLSSFGSFVVRSKGKRVGRNPKTGVEVAIEPRQV
MVFKPSNVLKAKINGLNGAGEHDDD

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1788005, Length=89, Percent_Identity=43.8202247191011, Blast_Score=89, Evalue=6e-20,
Organism=Escherichia coli, GI1790433, Length=86, Percent_Identity=33.7209302325581, Blast_Score=59, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFA_METRJ (B1LZ99)

Other databases:

- EMBL:   CP001001
- RefSeq:   YP_001756624.1
- ProteinModelPortal:   B1LZ99
- SMR:   B1LZ99
- GeneID:   6140022
- GenomeReviews:   CP001001_GR
- KEGG:   mrd:Mrad2831_3967
- HOGENOM:   HBG705085
- OMA:   VRGETVK
- ProtClustDB:   CLSK2478671
- GO:   GO:0006350
- HAMAP:   MF_00380
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 11233; Mature: 11102

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGKTVTRADLSEAVYHQVGLSRTESAALVETVLSEICSCLASGETVKLSSFGSFVVRSK
CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHCC
GKRVGRNPKTGVEVAIEPRQVMVFKPSNVLKAKINGLNGAGEHDDD
CCCCCCCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
AGKTVTRADLSEAVYHQVGLSRTESAALVETVLSEICSCLASGETVKLSSFGSFVVRSK
CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHCC
GKRVGRNPKTGVEVAIEPRQVMVFKPSNVLKAKINGLNGAGEHDDD
CCCCCCCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA