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The map label for this gene is rpoE [H]

Identifier: 170750325

GI number: 170750325

Start: 4177903

End: 4178538

Strand: Reverse

Name: rpoE [H]

Synonym: Mrad2831_3928

Alternate gene names: 170750325

Gene position: 4178538-4177903 (Counterclockwise)

Preceding gene: 170750326

Following gene: 170750324

Centisome position: 68.75

GC content: 73.11

Gene sequence:

>636_bases
ATGGCATCGGACAAGAACAAGCGCCCGGACCTCCTCGACCTGCTGGTGCCCCTGCGGCGCTACGCCCGGTCGCTCACCCG
CGACACGCTGCGGGCCGACGATCTCGTCCACGACACGCTGGTGCGGGCCCTGGAGATGCAGGGCTCGCTCCGGCCGAACA
CCAATCTGCGCACCTGGATGATGACGGTGCTGCACAACGCCTTCATCGACGAGCAGCGCCGCCGGCAGGTCGAGGCGCGG
CACGCCGACACGCTGGTGCGGATGACCGAGGACATGGCGCCGCCGGCCCAGGAGGGGCAGGTGCGCCTCGCCCAGATCCG
GCAGGCCTTCCTGAAGCTGCCGGAGGAGCAGCGCGCCGCGCTCCACCTCGTCACCCTGGAAGGCATGGCCTACGCCGACG
CGGCGGCCGTTCTCGGCATCCCGATCGGCACCCTGATGTCCCGTCTCGGCCGCGGCCGTGCGGCCCTGCGGGCCTTCGAG
GAGGGGACGCGGACCGACCGCGGCGCCGACGACGCGGAGACGGCCAAGGCACCCGAGACGCGGCGCGGGCCGCCCTCCAC
CCTCCGGCTCGTCGTCTCCGACGAGCCGCGGGAAAGGTCCGCCTGGCCTCTGCGACGCGCCGTCGGAGAGAGCTGA

Upstream 100 bases:

>100_bases
GCGGGTCATCTCGGGGATCGCCGCCACCCTCGATCAGGCCTGAGCTCTCAGCCGGGCCGGCCTGCGGGATTAAACCGCCG
GGCCGACGCGTTCACACCCT

Downstream 100 bases:

>100_bases
GCACGGAGCTGACGAAGGACCGGCACCCGAGGGCGCCGGTGGCGACTGACGATTGCGACCGGCGGATCGCCTCCGGGCAC
GCTGGATTCGAGGACTTCAC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MASDKNKRPDLLDLLVPLRRYARSLTRDTLRADDLVHDTLVRALEMQGSLRPNTNLRTWMMTVLHNAFIDEQRRRQVEAR
HADTLVRMTEDMAPPAQEGQVRLAQIRQAFLKLPEEQRAALHLVTLEGMAYADAAAVLGIPIGTLMSRLGRGRAALRAFE
EGTRTDRGADDAETAKAPETRRGPPSTLRLVVSDEPRERSAWPLRRAVGES

Sequences:

>Translated_211_residues
MASDKNKRPDLLDLLVPLRRYARSLTRDTLRADDLVHDTLVRALEMQGSLRPNTNLRTWMMTVLHNAFIDEQRRRQVEAR
HADTLVRMTEDMAPPAQEGQVRLAQIRQAFLKLPEEQRAALHLVTLEGMAYADAAAVLGIPIGTLMSRLGRGRAALRAFE
EGTRTDRGADDAETAKAPETRRGPPSTLRLVVSDEPRERSAWPLRRAVGES
>Mature_210_residues
ASDKNKRPDLLDLLVPLRRYARSLTRDTLRADDLVHDTLVRALEMQGSLRPNTNLRTWMMTVLHNAFIDEQRRRQVEARH
ADTLVRMTEDMAPPAQEGQVRLAQIRQAFLKLPEEQRAALHLVTLEGMAYADAAAVLGIPIGTLMSRLGRGRAALRAFEE
GTRTDRGADDAETAKAPETRRGPPSTLRLVVSDEPRERSAWPLRRAVGES

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23722; Mature: 23591

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASDKNKRPDLLDLLVPLRRYARSLTRDTLRADDLVHDTLVRALEMQGSLRPNTNLRTWM
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
MTVLHNAFIDEQRRRQVEARHADTLVRMTEDMAPPAQEGQVRLAQIRQAFLKLPEEQRAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHCCHHHHHH
LHLVTLEGMAYADAAAVLGIPIGTLMSRLGRGRAALRAFEEGTRTDRGADDAETAKAPET
EEEEEECCCHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHCCCCCC
RRGPPSTLRLVVSDEPRERSAWPLRRAVGES
CCCCCHHEEEEECCCCCCCCCCHHHHHCCCC
>Mature Secondary Structure 
ASDKNKRPDLLDLLVPLRRYARSLTRDTLRADDLVHDTLVRALEMQGSLRPNTNLRTWM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
MTVLHNAFIDEQRRRQVEARHADTLVRMTEDMAPPAQEGQVRLAQIRQAFLKLPEEQRAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHCCHHHHHH
LHLVTLEGMAYADAAAVLGIPIGTLMSRLGRGRAALRAFEEGTRTDRGADDAETAKAPET
EEEEEECCCHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHCCCCCC
RRGPPSTLRLVVSDEPRERSAWPLRRAVGES
CCCCCHHEEEEECCCCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]