BacMap

Definition	Methylobacterium radiotolerans JCM 2831 chromosome, complete genome.
Accession	NC_010505
Length	6,077,833

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The map label for this gene is yhdF [H]

Identifier: 170750143

GI number: 170750143

Start: 3984528

End: 3985406

Strand: Reverse

Name: yhdF [H]

Synonym: Mrad2831_3745

Alternate gene names: 170750143

Gene position: 3985406-3984528 (Counterclockwise)

Preceding gene: 170750144

Following gene: 170750141

Centisome position: 65.57

GC content: 72.47

Gene sequence:

>879_bases
ATGACCCAGGACCCGCGCGAGGCCGGCCCCCGGCCGCCCTTCCCCGGCGACCAGCAGCAGCCCCGCCCGGGCCTCACTAC
GAAGATGACGCCGCGCCCCGACCACGGCGAGGAGAGCTACGTCGGCAAGGGCCTGCTCACCGGCCAGGTGGCGCTGATCA
CCGGCGGCGACTCCGGGATCGGCCGGGCGGTGGCGATCGCCTACGCCCGCGAAGGCGCCGACGTGGCGATCTCCTACCTC
GAGGTCGAGCAGGAGGATGCCGAGGACACGAGGGCCTGGGTGGAGAAGGCCGGCCGCCGCTGCCTGCTGCTCCCCGGCGA
CATCCGCGACGCGGCCCAGTGCCGGGATCTCGTGGCGCGCACCGTCGAGGCCTTCGGGCGACTCGACATCCTCGTGAACA
ACGCCGCCGCGCAGGTGGTGAACGAGGGCCTCGACGATCTGGCGGCGCCCGACATCGAGGGCTCGTTCCGCGCCAACGTC
TTCGCCATGTACTACCTCGCCCAGGCGGCGGTGCCGCACATGAAGCCGGGCGGGGCGATCGTGAACAGCACCAGCGTGCA
GGCCAAGGTGGCCGATCCCAGCATGCTGATCTACGCCGCCACCAAGGGCGCGATCGCGAGCCTGACCATCGGCCTGTCGA
ACCTGCTGGCGCCGAAGGGGATCCGGGTGAACTGCGTCGCCCCCGGGCCGGTCTGGACGCCGATCCAGCCGATCGTGAAG
AGCCCGGATCAGATCGAGCAGCTCGGCGCGCAGACGCCGCTCGGCCGTGCCGGCCAGCCCGCGGAACTGGCCCCGGCCTA
CGTGCTGCTCGCCTCCCGCGAGGGCAGCTACATGTCCGGGGCGCTGGTGCCGGTCACCGGCGGCATGCCGATGCTCTGA

Upstream 100 bases:

>100_bases
ACCGCCCGATCAGGGCCACCGCCTGTGACCCCCGGGCGCAGGCGGTGGCCGCCGCGAAGGCCCTAGATCCTGCGGATCCC
CCGCCGAGGAGCCGCACACG

Downstream 100 bases:

>100_bases
CGCGGGCGCGGCGATCCGGGCGAGCGCCGCCGCGGAGGGGCGGGACGCCGCCCAAAGCCACGAGGACGCCGTCCGTCCGC
CTCAGCCGGTGGCGTATTCC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MTQDPREAGPRPPFPGDQQQPRPGLTTKMTPRPDHGEESYVGKGLLTGQVALITGGDSGIGRAVAIAYAREGADVAISYL
EVEQEDAEDTRAWVEKAGRRCLLLPGDIRDAAQCRDLVARTVEAFGRLDILVNNAAAQVVNEGLDDLAAPDIEGSFRANV
FAMYYLAQAAVPHMKPGGAIVNSTSVQAKVADPSMLIYAATKGAIASLTIGLSNLLAPKGIRVNCVAPGPVWTPIQPIVK
SPDQIEQLGAQTPLGRAGQPAELAPAYVLLASREGSYMSGALVPVTGGMPML

Sequences:

>Translated_292_residues
MTQDPREAGPRPPFPGDQQQPRPGLTTKMTPRPDHGEESYVGKGLLTGQVALITGGDSGIGRAVAIAYAREGADVAISYL
EVEQEDAEDTRAWVEKAGRRCLLLPGDIRDAAQCRDLVARTVEAFGRLDILVNNAAAQVVNEGLDDLAAPDIEGSFRANV
FAMYYLAQAAVPHMKPGGAIVNSTSVQAKVADPSMLIYAATKGAIASLTIGLSNLLAPKGIRVNCVAPGPVWTPIQPIVK
SPDQIEQLGAQTPLGRAGQPAELAPAYVLLASREGSYMSGALVPVTGGMPML
>Mature_291_residues
TQDPREAGPRPPFPGDQQQPRPGLTTKMTPRPDHGEESYVGKGLLTGQVALITGGDSGIGRAVAIAYAREGADVAISYLE
VEQEDAEDTRAWVEKAGRRCLLLPGDIRDAAQCRDLVARTVEAFGRLDILVNNAAAQVVNEGLDDLAAPDIEGSFRANVF
AMYYLAQAAVPHMKPGGAIVNSTSVQAKVADPSMLIYAATKGAIASLTIGLSNLLAPKGIRVNCVAPGPVWTPIQPIVKS
PDQIEQLGAQTPLGRAGQPAELAPAYVLLASREGSYMSGALVPVTGGMPML

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI59889578, Length=228, Percent_Identity=32.4561403508772, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI19923817, Length=269, Percent_Identity=28.2527881040892, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=32.2709163346614, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=30.2325581395349, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=30.7692307692308, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI10190704, Length=261, Percent_Identity=29.8850574712644, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI5031737, Length=254, Percent_Identity=29.5275590551181, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI4758504, Length=261, Percent_Identity=27.9693486590038, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI126723750, Length=254, Percent_Identity=29.9212598425197, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI66933014, Length=257, Percent_Identity=31.9066147859922, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI31542939, Length=211, Percent_Identity=30.3317535545024, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI33667109, Length=206, Percent_Identity=31.5533980582524, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI7705925, Length=255, Percent_Identity=29.8039215686275, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI7706318, Length=203, Percent_Identity=29.5566502463054, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI142976729, Length=223, Percent_Identity=27.3542600896861, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=32.7956989247312, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI224922801, Length=171, Percent_Identity=30.9941520467836, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI83715985, Length=261, Percent_Identity=25.6704980842912, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1789378, Length=272, Percent_Identity=52.2058823529412, Blast_Score=274, Evalue=5e-75,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=35.5102040816327, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=35.0194552529183, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=31.8367346938775, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1789208, Length=255, Percent_Identity=32.156862745098, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI87082160, Length=247, Percent_Identity=32.7935222672065, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=32.5301204819277, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI2367365, Length=245, Percent_Identity=33.8775510204082, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=29.9595141700405, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787335, Length=251, Percent_Identity=31.8725099601594, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1786812, Length=258, Percent_Identity=29.8449612403101, Blast_Score=85, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI193204405, Length=265, Percent_Identity=33.9622641509434, Blast_Score=121, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=33.3333333333333, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=33.8345864661654, Blast_Score=110, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17551412, Length=270, Percent_Identity=32.5925925925926, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17538480, Length=268, Percent_Identity=32.8358208955224, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17560332, Length=273, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=32.9501915708812, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI17562904, Length=269, Percent_Identity=30.4832713754647, Blast_Score=104, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17560220, Length=268, Percent_Identity=33.2089552238806, Blast_Score=103, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI17560150, Length=269, Percent_Identity=31.2267657992565, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=31.9391634980989, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=31.9548872180451, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=30.4182509505703, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17565030, Length=265, Percent_Identity=33.2075471698113, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17536025, Length=258, Percent_Identity=28.6821705426357, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=29.0836653386454, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=29.277566539924, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17561402, Length=255, Percent_Identity=28.6274509803922, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=29.8039215686275, Blast_Score=95, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=31.3207547169811, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17560676, Length=260, Percent_Identity=30.3846153846154, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17562910, Length=270, Percent_Identity=30.3703703703704, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=29.6153846153846, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=27.6679841897233, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=28.6274509803922, Blast_Score=91, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17555706, Length=275, Percent_Identity=26.9090909090909, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17561272, Length=259, Percent_Identity=28.1853281853282, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17564282, Length=188, Percent_Identity=32.9787234042553, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17538182, Length=262, Percent_Identity=29.0076335877863, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=25.8064516129032, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17558628, Length=202, Percent_Identity=28.7128712871287, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71982365, Length=210, Percent_Identity=25.2380952380952, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=30.2564102564103, Blast_Score=80, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6324126, Length=272, Percent_Identity=27.5735294117647, Blast_Score=78, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24639444, Length=257, Percent_Identity=34.2412451361868, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI23397609, Length=258, Percent_Identity=32.9457364341085, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24644339, Length=258, Percent_Identity=32.5581395348837, Blast_Score=114, Evalue=6e-26,
Organism=Drosophila melanogaster, GI21355319, Length=247, Percent_Identity=30.7692307692308, Blast_Score=104, Evalue=6e-23,
Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=31.1740890688259, Blast_Score=104, Evalue=7e-23,
Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=32.3886639676113, Blast_Score=104, Evalue=7e-23,
Organism=Drosophila melanogaster, GI24644337, Length=254, Percent_Identity=31.496062992126, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24643142, Length=244, Percent_Identity=30.7377049180328, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI17737361, Length=263, Percent_Identity=26.2357414448669, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21358495, Length=197, Percent_Identity=28.9340101522843, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI21357673, Length=203, Percent_Identity=27.0935960591133, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI281364892, Length=169, Percent_Identity=30.7692307692308, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30618; Mature: 30487

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQDPREAGPRPPFPGDQQQPRPGLTTKMTPRPDHGEESYVGKGLLTGQVALITGGDSGI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEECEEEEEECCCCCC
GRAVAIAYAREGADVAISYLEVEQEDAEDTRAWVEKAGRRCLLLPGDIRDAAQCRDLVAR
CCEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHH
TVEAFGRLDILVNNAAAQVVNEGLDDLAAPDIEGSFRANVFAMYYLAQAAVPHMKPGGAI
HHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE
VNSTSVQAKVADPSMLIYAATKGAIASLTIGLSNLLAPKGIRVNCVAPGPVWTPIQPIVK
EECCCEEEEECCCCEEEEEECCCCEEHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHC
SPDQIEQLGAQTPLGRAGQPAELAPAYVLLASREGSYMSGALVPVTGGMPML
CHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure 
TQDPREAGPRPPFPGDQQQPRPGLTTKMTPRPDHGEESYVGKGLLTGQVALITGGDSGI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEECEEEEEECCCCCC
GRAVAIAYAREGADVAISYLEVEQEDAEDTRAWVEKAGRRCLLLPGDIRDAAQCRDLVAR
CCEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHH
TVEAFGRLDILVNNAAAQVVNEGLDDLAAPDIEGSFRANVFAMYYLAQAAVPHMKPGGAI
HHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE
VNSTSVQAKVADPSMLIYAATKGAIASLTIGLSNLLAPKGIRVNCVAPGPVWTPIQPIVK
EECCCEEEEECCCCEEEEEECCCCEEHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHC
SPDQIEQLGAQTPLGRAGQPAELAPAYVLLASREGSYMSGALVPVTGGMPML
CHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]