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The map label for this gene is ydeB [H]

Identifier: 170750107

GI number: 170750107

Start: 3946974

End: 3947579

Strand: Direct

Name: ydeB [H]

Synonym: Mrad2831_3708

Alternate gene names: 170750107

Gene position: 3946974-3947579 (Clockwise)

Preceding gene: 170750106

Following gene: 170750108

Centisome position: 64.94

GC content: 67.49

Gene sequence:

>606_bases
ATGACCACAGCCAAGAAGACGACGACCGCAGGCCGGCAGGGCTTCAAGACCGGCGAGGCTGTCGTGTATCCGGCCCACGG
CGTCGGTCGCATCACCGCGATCGAGGAGCAGGAGATCGCCGGCTACAAGCTTGAGCTGTTCGTCGTATCGTTCGAGAAGG
ACAAGATGGTCCTGCGCGTCCCCACCGCGAAGGCTAACAGCGTCGGCATGCGCAAGCTCGCCGAGCCGGAACTGGTGAAG
AAGGCCCTCGACCTGCTGACCGGCCGCGCCCGGATCAAGCGCACCATGTGGTCGCGCCGCGCGCAGGAATACGAGGCCAA
GATCAACTCGGGCGACCTGCTCGCCGTCACCGAGGTCGTGCGCGACCTGTTCCGGTCCGAGGCCCAGCCGGAGCAGTCCT
ACTCCGAGCGTCAGCTCTACGAGGCCGCGCTGGACCGGATCGTGCGCGAGATCTCGTCGGTGAACCGCATCACCGAGACC
GAGGCCCTGAAGCTGATCGAGCAGAGCCTCGCCAAGTCGCCCCGCCGTGCCAAGAGCGAGGCGGAGCCCGAGGCCGAGGC
CGACGGGGACAGCGAGGGCGACGACATCCAGGAGGAGGCCGCCTGA

Upstream 100 bases:

>100_bases
CGCCGGGTCCGGGAGCGGCGAGGCAGACCGGGTGTCCCGCCCGGAAGAACACGGTTTCGCGCGGCGCCGAACGCTGCGCG
CCAGTGGAGGCCCTTCTCGC

Downstream 100 bases:

>100_bases
GGCGCCTCTCTCCGCGAACGGCATCGAACCCGGCCAAGGTGGCCGGGTTTTTTGTGTCTGGCGGGCCGGACCGAAGCGCT
GAACGCGGTCGTTTCGGGAC

Product: CarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MTTAKKTTTAGRQGFKTGEAVVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRVPTAKANSVGMRKLAEPELVK
KALDLLTGRARIKRTMWSRRAQEYEAKINSGDLLAVTEVVRDLFRSEAQPEQSYSERQLYEAALDRIVREISSVNRITET
EALKLIEQSLAKSPRRAKSEAEPEAEADGDSEGDDIQEEAA

Sequences:

>Translated_201_residues
MTTAKKTTTAGRQGFKTGEAVVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRVPTAKANSVGMRKLAEPELVK
KALDLLTGRARIKRTMWSRRAQEYEAKINSGDLLAVTEVVRDLFRSEAQPEQSYSERQLYEAALDRIVREISSVNRITET
EALKLIEQSLAKSPRRAKSEAEPEAEADGDSEGDDIQEEAA
>Mature_200_residues
TTAKKTTTAGRQGFKTGEAVVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRVPTAKANSVGMRKLAEPELVKK
ALDLLTGRARIKRTMWSRRAQEYEAKINSGDLLAVTEVVRDLFRSEAQPEQSYSERQLYEAALDRIVREISSVNRITETE
ALKLIEQSLAKSPRRAKSEAEPEAEADGDSEGDDIQEEAA

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 22373; Mature: 22241

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTAKKTTTAGRQGFKTGEAVVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRV
CCCCCCCCHHHHCCCCCCCEEEECCCCCCEEEEECHHHHCCEEEEEEEEEECCCCEEEEE
PTAKANSVGMRKLAEPELVKKALDLLTGRARIKRTMWSRRAQEYEAKINSGDLLAVTEVV
CCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
RDLFRSEAQPEQSYSERQLYEAALDRIVREISSVNRITETEALKLIEQSLAKSPRRAKSE
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC
AEPEAEADGDSEGDDIQEEAA
CCCCCCCCCCCCCCCHHHHCC
>Mature Secondary Structure 
TTAKKTTTAGRQGFKTGEAVVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRV
CCCCCCCHHHHCCCCCCCEEEECCCCCCEEEEECHHHHCCEEEEEEEEEECCCCEEEEE
PTAKANSVGMRKLAEPELVKKALDLLTGRARIKRTMWSRRAQEYEAKINSGDLLAVTEVV
CCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
RDLFRSEAQPEQSYSERQLYEAALDRIVREISSVNRITETEALKLIEQSLAKSPRRAKSE
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC
AEPEAEADGDSEGDDIQEEAA
CCCCCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]