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The map label for this gene is rimM

Identifier: 170750014

GI number: 170750014

Start: 3842416

End: 3843111

Strand: Reverse

Name: rimM

Synonym: Mrad2831_3615

Alternate gene names: 170750014

Gene position: 3843111-3842416 (Counterclockwise)

Preceding gene: 170750015

Following gene: 170750011

Centisome position: 63.23

GC content: 76.01

Gene sequence:

>696_bases
ATGGCGCGCCGCCCCGCAGGTCCCACCTCCCGCGACGGCGGCCGCCGAGGCCGCACGAGCTCGGCGATCGGCAAGATCGC
GCCCGACGCGGCGACCTCGCCCAAGGCACCGGCCCCCAGGCCGGCGCCGCCGCCCGTGCCGCCCGATCCCAACCTCGTCC
TGCTGGGCGAGTTCGGGCGGGCGCACGGCCTCACCGGCGAGGTCCGGCTCAAGTCCTACACCGGCGATCCGCAGGCGATC
GCCGGCTACGGAGCGCTCCAGACGTCCGACGGCCGGACGCTGGCGCTCGCCGACGTGCGTCCCGCCCCCGGCTCGTCGCC
CGACATGCTGATCGCCCGGGTCAAGGGTGTCTCGGGCCGCAGCGCCGCGGAGGCGCTCAACCGCGTGGCCCTGTTCGTTC
CCCGCGACCGTCTGGCCGCGCCCGAGGACGACGACGAGGTCTACGCCGCCGACCTGATCGGCGCCGCGGCGGTGGACGAG
GCCGGAACCCTCGTCGGGACGATCGTGGCCGTGCCGAATTACGGCGGCGGCGATCTCCTGGAGCTGCGACCGCCGAACGG
CGGCGCCACCGCGCTCCTGCCCTTCACCAAGGCCTTCGTGCCGGTCCTCGACGTGGCGCAGCGCCGCGTCACCGTGGCCG
CGCCGGAGGATCTGTTCGCGGCACCGGGCGAGAAGCCCGCCGACGATCCGGGCTAG

Upstream 100 bases:

>100_bases
GAAGGCGGAGCCGGGCGAGAAGGCCAAGGAGCGCGCCGCCAAGCGCGCCGAGAAGGCCGCCGCCCCCGCCGAGGACGCCG
CCGCGTAAGGCGCACCGGTC

Downstream 100 bases:

>100_bases
GGCTCGGGGGCCGGTCCGCGCGCCGAGGGCGCGTCCGGAATCCGGGCGCCGTCCCGGCCGCGGCCGCCGCCCTCAGTGCC
CCCCGGCCGGCGCCCCACCG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MARRPAGPTSRDGGRRGRTSSAIGKIAPDAATSPKAPAPRPAPPPVPPDPNLVLLGEFGRAHGLTGEVRLKSYTGDPQAI
AGYGALQTSDGRTLALADVRPAPGSSPDMLIARVKGVSGRSAAEALNRVALFVPRDRLAAPEDDDEVYAADLIGAAAVDE
AGTLVGTIVAVPNYGGGDLLELRPPNGGATALLPFTKAFVPVLDVAQRRVTVAAPEDLFAAPGEKPADDPG

Sequences:

>Translated_231_residues
MARRPAGPTSRDGGRRGRTSSAIGKIAPDAATSPKAPAPRPAPPPVPPDPNLVLLGEFGRAHGLTGEVRLKSYTGDPQAI
AGYGALQTSDGRTLALADVRPAPGSSPDMLIARVKGVSGRSAAEALNRVALFVPRDRLAAPEDDDEVYAADLIGAAAVDE
AGTLVGTIVAVPNYGGGDLLELRPPNGGATALLPFTKAFVPVLDVAQRRVTVAAPEDLFAAPGEKPADDPG
>Mature_230_residues
ARRPAGPTSRDGGRRGRTSSAIGKIAPDAATSPKAPAPRPAPPPVPPDPNLVLLGEFGRAHGLTGEVRLKSYTGDPQAIA
GYGALQTSDGRTLALADVRPAPGSSPDMLIARVKGVSGRSAAEALNRVALFVPRDRLAAPEDDDEVYAADLIGAAAVDEA
GTLVGTIVAVPNYGGGDLLELRPPNGGATALLPFTKAFVPVLDVAQRRVTVAAPEDLFAAPGEKPADDPG

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_METRJ (B1LVU1)

Other databases:

- EMBL:   CP001001
- RefSeq:   YP_001756274.1
- ProteinModelPortal:   B1LVU1
- SMR:   B1LVU1
- GeneID:   6139668
- GenomeReviews:   CP001001_GR
- KEGG:   mrd:Mrad2831_3615
- HOGENOM:   HBG703775
- OMA:   KNILNFG
- ProtClustDB:   PRK00122
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 23516; Mature: 23385

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRPAGPTSRDGGRRGRTSSAIGKIAPDAATSPKAPAPRPAPPPVPPDPNLVLLGEFGR
CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
AHGLTGEVRLKSYTGDPQAIAGYGALQTSDGRTLALADVRPAPGSSPDMLIARVKGVSGR
CCCCCCEEEEEEECCCCCCEECCCEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCC
SAAEALNRVALFVPRDRLAAPEDDDEVYAADLIGAAAVDEAGTLVGTIVAVPNYGGGDLL
HHHHHHHHEEEEECHHHCCCCCCCCCEEHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEE
ELRPPNGGATALLPFTKAFVPVLDVAQRRVTVAAPEDLFAAPGEKPADDPG
EEECCCCCCEEEHHHHHHHHHHHHHHHHEEEEECCHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
ARRPAGPTSRDGGRRGRTSSAIGKIAPDAATSPKAPAPRPAPPPVPPDPNLVLLGEFGR
CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
AHGLTGEVRLKSYTGDPQAIAGYGALQTSDGRTLALADVRPAPGSSPDMLIARVKGVSGR
CCCCCCEEEEEEECCCCCCEECCCEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCC
SAAEALNRVALFVPRDRLAAPEDDDEVYAADLIGAAAVDEAGTLVGTIVAVPNYGGGDLL
HHHHHHHHEEEEECHHHCCCCCCCCCEEHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEE
ELRPPNGGATALLPFTKAFVPVLDVAQRRVTVAAPEDLFAAPGEKPADDPG
EEECCCCCCEEEHHHHHHHHHHHHHHHHEEEEECCHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA